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0
votes
0
replies
811
views
Limma User Guide: normalizeBetweenArrays
limma
limma
18.8 years ago
Gordon Smyth
50k
0
votes
0
replies
1.2k
views
Optimize the parameter span for loess (or spar for smooth.spline)
loess
smooth.spline
9.3 years ago
wenbostar
• 0
0
votes
0
replies
869
views
Cel -> MAGE-ML
Infrastructure
affy
RMAGEML
Infrastructure
affy
RMAGEML
18.4 years ago
Steffen Durinck
▴ 420
0
votes
0
replies
905
views
Advanced Course R Programming and Development - EMBL Heidelberg - 28.-29. November 2011
12.6 years ago
Wolfgang Huber
★ 13k
0
votes
0
replies
317
views
Mfuzz package loading issues
Mfuzz
MacBook
loadingissues
6 months ago
Jon
• 0
0
votes
1
reply
644
views
MutationalPattern R plot96 error
software error
5.0 years ago
khanm
• 0
0
votes
0
replies
883
views
batch info for cellHTS2
Normalization
cellHTS2
Normalization
cellHTS2
14.5 years ago
florian.hahne@novartis.com
★ 1.6k
0
votes
0
replies
823
views
Re: Additional questions regarding LIMMA
Normalization
BRAIN
Normalization
BRAIN
20.9 years ago
Gordon Smyth
50k
0
votes
0
replies
875
views
Quantifying reporter expression to validate sequencing
alignment
Fastq
fasta
5.5 years ago
A
▴ 40
1
vote
2
replies
1.6k
views
Bioconductor / COHCAP GitHub Update
github
git-svn bridge
git
6.7 years ago
cwarden45
• 0
0
votes
0
replies
1.5k
views
edgeR and prior.n
edgeR
edgeR
10.2 years ago
Jason Miller
▴ 20
0
votes
0
replies
773
views
How to: design matrices for multi organism parts experiment
Organism
BRAIN
Organism
BRAIN
13.0 years ago
Hans
▴ 10
0
votes
0
replies
459
views
ratLLMappings_1.5.1.
19.2 years ago
Wolfgang Huber
★ 13k
0
votes
2
replies
1.4k
views
Error in installing org.Hs.eg.db
software error
org.Hs.eg.db
win10
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
chao-1993
• 0
0
votes
0
replies
842
views
ASC/NZSA 2006 - Detailed Program Available via the Website
GO
GO
18.0 years ago
David Scott
▴ 20
0
votes
0
replies
657
views
Fwd:decideTests nestedF
limma
oligo
limma
oligo
18.4 years ago
daniela.marconi@libero.it
▴ 100
0
votes
0
replies
739
views
PDNN compatibility with RAE230A
affypdnn
affypdnn
19.2 years ago
Jordi Altirriba Gutiérrez
▴ 350
0
votes
0
replies
785
views
a customized GO term
GO
GO
15.8 years ago
Weiwei Shi
★ 1.2k
0
votes
0
replies
1.2k
views
FDR (False Discovery Rate)
baySeq
DEGseq
baySeq
DEGseq
12.2 years ago
Tina Asante Boahene
▴ 100
0
votes
0
replies
601
views
Package Icens_1.16.0.tar.gz has been built for Windows
14.6 years ago
Uwe.Ligges@r-project.org
▴ 120
0
votes
0
replies
651
views
[Re] Filtering by Fold Change
Normalization
Normalization
19.9 years ago
peter robinson
▴ 300
0
votes
0
replies
906
views
GEOquery::parseGEO throws error reading file
GEOquery
GEOquery
15.8 years ago
Gad Abraham
▴ 110
0
votes
0
replies
836
views
Pathview package for pathway based data integration and visualization
Visualization
pathview
Visualization
pathview
11.1 years ago
Luo Weijun
★ 1.6k
2
votes
11
replies
5.5k
views
Error: cannot allocate vector of size ...MB
limma
8.3 years ago
fahime.falahi
• 0
0
votes
0
replies
808
views
Fwd: Urgent..........Problem in using ABarray
ABarray
ABarray
14.8 years ago
Priyanka Jain
▴ 20
0
votes
0
replies
849
views
Tips for the findOverlappingPeaks function in ChIPpeakAnno package
IRanges
IRanges
13.9 years ago
Noah Dowell
▴ 410
0
votes
0
replies
1.1k
views
Combine RankProd output Tables (up & down)
RankProd
8.7 years ago
horcsct
▴ 10
0
votes
0
replies
619
views
GenePix files .mrg
Microarray
Cancer
limma
Microarray
Cancer
limma
18.9 years ago
Gordon Smyth
50k
0
votes
0
replies
763
views
Incorporating limma duplicateCorrelation() function into minfi dmpFinder() for a mixed model approach
minfi
limma
lmm
lmfit
dmpFinder
2.9 years ago
kyleyxw
• 0
0
votes
0
replies
670
views
JOB: Open position within the Rfam group at the Sanger Institute (fwd)
14.2 years ago
Cei Abreu-Goodger
▴ 830
0
votes
1
reply
1.6k
views
how to analyze CNV data
copy number
6.8 years ago
mms140130
• 0
0
votes
0
replies
3.1k
views
topGO enrichment using ensembl gene list
Microarray
Annotation
GO
PROcess
globaltest
topGO
Microarray
Annotation
GO
PROcess
topGO
16.1 years ago
Adrian Alexa
▴ 400
0
votes
0
replies
825
views
ChIPpeakAnno, callEnrichedRegions results have "holes"
Yeast
Yeast
11.7 years ago
Susan Wilson
▴ 50
0
votes
0
replies
852
views
goTools question
probe
goTools
probe
goTools
13.6 years ago
Pete Shepard
▴ 240
0
votes
0
replies
745
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
6.0 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.7k
views
question about design for limma time course, 2 conditions and drug treatment microarray experiment
Microarray
limma
DOSE
Microarray
limma
DOSE
10.4 years ago
Gordon Smyth
50k
0
votes
0
replies
716
views
bug found in restfulSE::BQ3_Array/repaired
bug
5.7 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
4
replies
893
views
Annotation of DEXSeqHTML with biomaRt
dexseq
biomart
6.0 years ago
Matthew Thornton
▴ 350
0
votes
0
replies
513
views
RE: get over it/WAKE uP and SMELL the COFFEE (Naomi Altman)
Microarray
Microarray
20.4 years ago
Baker, Stephen
▴ 160
0
votes
0
replies
871
views
13th MRC Social, Genetic & Developmental Psychiatry SUMMER SCHOOL 18th - 22th June 2012
Genetics
Genetics
12.1 years ago
Adaikalavan Ramasamy
▴ 100
0
votes
0
replies
781
views
pearson correlation
19.8 years ago
Dixon, Dr R.
▴ 20
0
votes
0
replies
207
views
Deposit Alert
15.6 years ago
Westpac
▴ 10
0
votes
0
replies
615
views
Mac binaries for R 2.12 fixed
Cancer
Cancer
13.5 years ago
Hervé Pagès
16k
0
votes
3
replies
1.8k
views
How to handle multi-TSS genes in Repitools?
repitools
promoter
tss
annotation
6.1 years ago
Ryan C. Thompson
★ 7.9k
0
votes
0
replies
1.0k
views
Computational Epigenomics faculty position
Microarray
Microarray
17.4 years ago
John Greally
▴ 10
0
votes
0
replies
957
views
LIMMA
limma
oligo
limma
oligo
14.0 years ago
Tan, Yifang
▴ 50
0
votes
0
replies
1.0k
views
Making table with SNP-ID, allele combination and genotype to verify correctness.
GeneticsBase
GeneticsBase
15.1 years ago
Johannes Gulmann Madsen
▴ 20
0
votes
0
replies
504
views
error in limma read.maimages(files, source="imagene")
limma
limma
18.3 years ago
Gordon Smyth
50k
0
votes
6
replies
657
views
Discrepancy in read counts of XBP1 (ENSG00000100219) transcript isoforms
recountNNLS bug
non-canonical splicing in RNAseq data
4.5 years ago
kvoutet
• 0
0
votes
0
replies
447
views
oligo with pd.genomewidesnp.6 library error
16.1 years ago
Sergii Ivakhno
▴ 100
1,000 results • Page
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Comment: Postdoctoral Position in Bioinformatics - Mainz, Germany
by
Jammie
• 0
[Online kasiinod][1] pakuvad mängijatele võimalust nautida põnevat hasartmängukogemust otse oma arvuti või mobiilseadme kaudu. Need kasiino…
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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