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0
votes
0
replies
426
views
Title in dba.plotProfile
DiffBind
12 months ago
agata17
• 0
0
votes
0
replies
883
views
Distance function and gene expression standardization for clustering
Clustering
Cancer
Clustering
Cancer
16.8 years ago
Serge Eifes
▴ 90
0
votes
0
replies
1.1k
views
nsFilter and featureFilter
12.9 years ago
khadeeja ismail
▴ 400
0
votes
0
replies
1.1k
views
How to determine if clinical variables are responsible for gene expression with limma
Microarray
limma
Microarray
limma
15.1 years ago
Jon Manning
▴ 40
0
votes
0
replies
780
views
Two cDNA arrays whose samples are the same but probes are not
Microarray
probe
Microarray
probe
15.8 years ago
Seungwoo Hwang
▴ 80
0
votes
0
replies
803
views
4-way venn diagram with ChIPpeakAnno
ChIPpeakAnno
ChIPpeakAnno
13.0 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
572
views
Plotting a line plot for genes across 4-species
RNAseq123
22 months ago
Mohamed
▴ 30
0
votes
0
replies
633
views
Position Available. Genomics Core
Genetics
Genetics
20.3 years ago
Michael McClelland
▴ 10
0
votes
0
replies
794
views
loading affy cdf files
cdf
affy
PROcess
cdf
affy
PROcess
21.0 years ago
Nancy Petersen
▴ 10
0
votes
0
replies
1.4k
views
CellMix package use with own data matrix
convert
convert
10.2 years ago
Riba Michela
▴ 90
0
votes
0
replies
1.0k
views
rflowcyt and prada questions
prada
rflowcyt
prada
rflowcyt
18.0 years ago
Nolwenn LeMeur
▴ 140
0
votes
0
replies
431
views
references about the methods of normalization
limma
limma
18.9 years ago
NATALIA F TCHETCHERINA
▴ 60
0
votes
0
replies
527
views
Error while running ChAMP pipeline
champ.dmr
5.4 years ago
sinha.puja
▴ 10
0
votes
0
replies
664
views
problrm in using vsn package
21.1 years ago
Mahbub Latif
▴ 70
0
votes
0
replies
806
views
RDAVIDWebService Package Official Gene Symbol IDs in GO Term Tables
RDAVIDWebService
Gene Ontology
GOTerm
biomaRt
3.9 years ago
ra711
• 0
0
votes
1
reply
1.2k
views
problem in installing "org.Hs.eg.db" package
org.Hs.eg.db
updated 2.5 years ago by
shepherl
3.9k • written 2.5 years ago by
Shuiqing
• 0
0
votes
0
replies
704
views
problem with read.maimages wt.fun
14.7 years ago
gb606342000
▴ 30
0
votes
0
replies
653
views
Disabling aggregation with the option -r no, still combines genes into single “aggregate genes"
DEXSeq
2.9 years ago
n.tear
▴ 20
0
votes
0
replies
519
views
affyQCReport Border Elements plot
15.9 years ago
Nathan.Watson-Haigh@csiro.au
▴ 210
0
votes
1
reply
805
views
Biocparallel Error "Error: BiocParallel errors element index: 1, 2, 3 first error: unable to find an inherited method for function ‘bpbackend’ fo…
R
OUTRIDER
BiocParallel
updated 17 months ago by
Christian Mertes
• 0 • written 18 months ago by
me.achleitner
• 0
1
vote
5
replies
1.0k
views
How to analyze unannotated lncRNA using RNA-seq data?
rnaseq
7.6 years ago
xiaoyonf
• 0
0
votes
0
replies
487
views
bioinformatics position at Harvard Medical School
16.9 years ago
Wall, Dennis Paul
▴ 80
0
votes
0
replies
816
views
Problem with SPILL matrix / keyword when using write.FCS and flowCore?
11.7 years ago
Jiang, Mike
★ 1.3k
0
votes
0
replies
938
views
Resend: altcdfenvs: mapping probes and creating new probe sets: guidance requested
cdf
probe
affy
altcdfenvs
cdf
probe
affy
altcdfenvs
12.9 years ago
Ariel Grostern
▴ 80
0
votes
0
replies
481
views
Subject= using beadarray to process iscan expression data - error using readIllumina()
10.7 years ago
Alan L Hutchison
▴ 10
0
votes
0
replies
689
views
plot with two x-axis
12.4 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
0
replies
440
views
Release 1.7 - Oligo package?
GO
oligo
GO
oligo
18.6 years ago
Seth Falcon
★ 7.4k
0
votes
0
replies
571
views
custom Methods for summary expression value
18.9 years ago
stecalza@tiscali.it
▴ 290
0
votes
1
reply
1.2k
views
Monocle group sizes
monocle
7.2 years ago
ribioinfo
▴ 100
0
votes
0
replies
2.0k
views
Error in GAGE analysis
trio
trio
12.3 years ago
Javerjung Sandhu
▴ 200
0
votes
0
replies
427
views
limma duplicateCorrelation question
17.5 years ago
Karen Vranizan
▴ 100
0
votes
0
replies
18k
views
1000 R tutorials/Links
Sequencing
Microarray
Genetics
Visualization
Network
Bayesian
Classification
Clustering
14.0 years ago
David Lyon
▴ 340
1
vote
7
replies
2.6k
views
bplapply() fails when BPPARAM = SnowParam() is specified
biocparallel
9.6 years ago
jessica.hekman
▴ 40
0
votes
0
replies
1.2k
views
gage pca loadings
pca
gage
loadings
7.2 years ago
MT
▴ 10
0
votes
0
replies
751
views
Unexpectedly high FDR using contrasts in Limma?
17.2 years ago
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
0
replies
954
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf
probe
genefilter
affy
simpleaffy
affyQCReport
cdf
probe
genefilter
affy
simpleaffy
17.3 years ago
Wu, Xiwei
▴ 350
0
votes
0
replies
484
views
Sequence data from Probes
19.5 years ago
hrishikesh deshmukh
▴ 420
0
votes
0
replies
622
views
GEO newbie search question
limma
limma
11.7 years ago
Sylvain Foisy
▴ 80
0
votes
0
replies
616
views
biomaRt and HapMap
biomaRt
biomaRt
12.8 years ago
Lasse Folkersen
▴ 20
0
votes
3
replies
1.4k
views
Rsamtools PileupParam set minimum depth to zero
rsamtools
pileup
8.3 years ago
komal.rathi
▴ 120
0
votes
2
replies
841
views
I am getting a segfault reading a SBML file with rsbml_read
rsbml
3.4 years ago
Robert Dunne
▴ 10
0
votes
0
replies
1.4k
views
How to install BioConductor packages with a computer behind a proxy
13.3 years ago
Aswin Seshasayee
▴ 10
0
votes
0
replies
415
views
Conversion of multiple protein fasta sequences into their gene name
GenePrediction
18 months ago
AROCKIYA
• 0
0
votes
2
replies
2.6k
views
No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
RSQLite
lumi
3.6 years ago
Rohmatul
• 0
0
votes
0
replies
1.4k
views
how to make an MA plot with single color agilent microarray?
Microarray
Microarray
12.9 years ago
Richard Green
▴ 90
1
vote
1
reply
777
views
NOIseq Probability column
RNAseq
RNASeqData
NOISeq
24 months ago • updated 23 months ago
Pratibha
▴ 10
0
votes
0
replies
1.1k
views
DESeq estimateDispersion query
GO
edgeR
DESeq
GO
edgeR
DESeq
12.3 years ago
Iain Gallagher
▴ 930
0
votes
1
reply
1.3k
views
ggbio tracks issue
ggbio
tracks
7.5 years ago
longoka
• 0
0
votes
0
replies
620
views
What does LOESS stand for?
19.7 years ago
Eric Blalock
▴ 250
0
votes
0
replies
698
views
BLASTn using R
SequenceMatching
SequenceAnnotation
2.2 years ago
Prateek
• 0
1,000 results • Page
2 of 20
Recent ...
Replies
Answer: Counter-directional LFC shrinkage
by
swbarnes2
★ 1.4k
The y axes in those plots are logged. The average for condition1 is going to be higher than condition2 because of the very high outliers. …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Thanks for all suggestions and getting to the bottom of this! Unfortunately, fixing C code goes way above my skill level, so I cannot contr…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
I think the solution is for the C code in `oligo` to be updated to work with more modern versions of `zlib`. The `zlibbioc` package is real…
Comment: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
I don't fully understand what you are asking... Yet, in my opinion it doesn't make sense to use the results of only 12 genes for ORA (nor G…
Comment: Counter-directional LFC shrinkage
by
ATpoint
★ 4.2k
Is this RNA-seq? The unshrunken MA-plot looks very odd and indicates that normalization is completely offset.
Votes
A: DESeq2: add annotations (from data frame) to DESeqDataSet
Answer: Error in gseDO function
Comment: what the test method for enrichGO in clusterProfiler?
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
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Dario Strbenac
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shepherl
3.9k
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to
kevin.rue
▴ 350
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