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Showing :
CAMERA
•
reset
4
votes
12
replies
2.4k
views
Limma Camera error
limma
camera
8.5 years ago
ea1402
▴ 20
4
votes
11
replies
1.9k
views
Dealing with duplicated genes in camera gene set testing
limma
camera
gene set testing
ensembl
updated 4.4 years ago by
Robert Castelo
★ 3.3k • written 4.4 years ago by
Jeremy Beales
▴ 10
4
votes
9
replies
1.8k
views
HELP! Troubleshooting Installing EBImage Package
Install
CAMERA
insta
PackageType
updated 3.4 years ago by
Andrzej Oleś
▴ 750 • written 3.4 years ago by
Christopher
• 0
10
votes
9
replies
6.4k
views
CAMERA error: $ operator not defined for this S4 class
software error
CAMERA
updated 8.8 years ago by
ckuhl
▴ 20 • written 8.8 years ago by
scott.walmsley
▴ 60
0
votes
7
replies
2.4k
views
Camera gene set interpretation
limma
camera
gene set analysis
gene set enrichment
updated 7.2 years ago by
Gordon Smyth
50k • written 7.2 years ago by
natalia.pietrosemoli
• 0
3
votes
7
replies
1.7k
views
major camera change from limma 3.22 to 3.28?
limma
camera
updated 7.7 years ago by
Gordon Smyth
50k • written 7.7 years ago by
mski
▴ 10
0
votes
6
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
rtracklayer
CAMERA
chipseq
Gviz
updated 11.0 years ago by
Robert Ivanek
▴ 730 • written 11.0 years ago by
Guest User
★ 13k
0
votes
6
replies
1.8k
views
Different results obtained from mroast and camera from Deseq2 counts
limma
camera
mroast
tximport
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
jarod_v6@libero.it
▴ 40
1
vote
5
replies
2.1k
views
Confused by results from CAMERA gene set testing
limma
camera
gene set testing
8.0 years ago
claire.n.levy
▴ 10
2
votes
4
replies
1.7k
views
Getting gene ID's from camera results
limma
camera
updated 8.0 years ago by
phil.chapman
▴ 150 • written 8.0 years ago by
AB
▴ 110
3
votes
4
replies
1.5k
views
Competitive gene set testing between two sets of genes
gene set testing
camera
edger
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
le2336
▴ 20
8
votes
4
replies
1.7k
views
NaN results on some pathways in CAMERA
camera
edger
pathway analysis
updated 8.9 years ago by
Gordon Smyth
50k • written 8.9 years ago by
Ryan C. Thompson
★ 7.9k
2
votes
4
replies
3.0k
views
Arguments for camera (gene set analysis)
camera
GSEA
updated 8.1 years ago by
Steve Lianoglou
★ 13k • written 8.1 years ago by
claire.n.levy
▴ 10
3
votes
4
replies
1.8k
views
Random effects with limma's camera()
limma
camera
duplicatecorrelation
updated 8.2 years ago by
Gordon Smyth
50k • written 8.2 years ago by
Stephen Hoang
▴ 30
3
votes
4
replies
5.2k
views
Gene set analysis with CAMERA
limma
gene set analysis
camera
updated 9.0 years ago by
Gordon Smyth
50k • written 9.5 years ago by
krishna312
• 0
8
votes
4
replies
5.5k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma
edger
mroast
romer
camera
updated 8.2 years ago by
Steve Lianoglou
★ 13k • written 8.2 years ago by
maltethodberg
▴ 170
0
votes
3
replies
1.4k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA
CAMERA
updated 9.7 years ago by
Steve Lianoglou
★ 13k • written 9.7 years ago by
Guest User
★ 13k
0
votes
3
replies
2.2k
views
CAMERA for non-directional gene sets
GO
limma
CAMERA
GO
limma
CAMERA
updated 11.6 years ago by
Wu, Di
▴ 120 • written 11.6 years ago by
Simon de Bernard
▴ 20
1
vote
3
replies
1.8k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS
xcmx
CAMERA
updated 7.6 years ago by
ron.wehrens
▴ 20 • written 7.6 years ago by
lucie.conchou
• 0
0
votes
3
replies
1.9k
views
limma camera function Multiple contrasts
limma
microarray
contrast
camera
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
gaby8638
▴ 20
1
vote
3
replies
619
views
Can CAMERA analyze just one particular pathway
pathway
ORA
limma
CAMERA
DGE
updated 8 months ago by
Gordon Smyth
50k • written 8 months ago by
manuelsokolov
• 0
0
votes
3
replies
585
views
Battery gene sets for CAMERA limma
CAMERA
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
brov.olia
• 0
1
vote
3
replies
331
views
CAMERA + Gene Ontology Gene Sets
GO
limma
CAMERA
updated 10 weeks ago by
Gordon Smyth
50k • written 10 weeks ago by
Tyler Sagendorf
▴ 10
7
votes
2
replies
1.3k
views
Pre-ranked camera gene set testing with edgeR results
limma
camera
cameraPR
edgeR
gene set testing
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
jamie.gearing
▴ 60
0
votes
2
replies
1.4k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera
limma
gene set analysis
gene set enrichment
updated 5.5 years ago by
Gordon Smyth
50k • written 5.5 years ago by
emeline.perthame
• 0
2
votes
2
replies
793
views
how to make a group to apply the data to CAMERA
CAMERA
23 months ago
Akira
• 0
0
votes
2
replies
1.5k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma
proteomics
camera
mroast
romer
updated 7.6 years ago by
Gordon Smyth
50k • written 7.6 years ago by
natalia.pietrosemoli
• 0
5
votes
2
replies
2.1k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2
edger
limma
romer
camera
updated 8.7 years ago by
Gordon Smyth
50k • written 8.7 years ago by
phil.chapman
▴ 150
0
votes
2
replies
1.3k
views
Using camera on a filtered expression matrix
camera
limma
gene set analysis
updated 9.2 years ago by
Gordon Smyth
50k • written 9.2 years ago by
giovanni.dario
• 0
3
votes
2
replies
1.2k
views
how to deal with technical replicates in limma camera
limma
camera
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
Yury Bukhman
▴ 20
0
votes
2
replies
1.4k
views
IdeogramTrack and bigWig file errors in Gviz
Network
rtracklayer
CAMERA
Gviz
Network
rtracklayer
CAMERA
Gviz
11.0 years ago
Michael Lawrence
★ 11k
0
votes
2
replies
1.9k
views
romer implementation in edgeR
limma
edgeR
CAMERA
limma
edgeR
CAMERA
updated 10.8 years ago by
Gordon Smyth
50k • written 10.8 years ago by
Pekka Kohonen
▴ 190
1
vote
2
replies
1.5k
views
Package won't recognise raw data files
camera
metabolomics
r
6.4 years ago
bhgyu
▴ 30
10
votes
2
replies
2.8k
views
How barcode-plot enrichment is calculated?
limma
barcodeplot
camera
updated 5.6 years ago by
Gordon Smyth
50k • written 5.6 years ago by
Eddie Imada
• 0
0
votes
1
reply
2.6k
views
CAMERA limma package. Gene set analysis.
limma
camera
updated 9.0 years ago by
Gordon Smyth
50k • written 9.0 years ago by
udontknowmyiddou
• 0
0
votes
1
reply
1.2k
views
LIMMA Camera missing IDs.
limma
camera
updated 6.7 years ago by
Gordon Smyth
50k • written 6.7 years ago by
dangh
• 0
3
votes
1
reply
1.1k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma
camera
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
sarah.williams1
▴ 40
0
votes
1
reply
1.3k
views
limma: Camera() about the input data
limma
camera
updated 6.6 years ago by
Gordon Smyth
50k • written 6.6 years ago by
django_w
• 0
0
votes
1
reply
1.5k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq
GO
Network
rtracklayer
CAMERA
chipseq
Gviz
ChIPSeq
GO
Network
rtracklayer
Gviz
updated 10.6 years ago by
Michael Lawrence
★ 11k • written 10.6 years ago by
Miles Pufall
▴ 40
0
votes
1
reply
1.2k
views
romer implementation in edgeR
edgeR
CAMERA
edgeR
CAMERA
updated 8.2 years ago by
Gordon Smyth
50k • written 10.8 years ago by
Julie Leonard
▴ 110
0
votes
0
replies
1.1k
views
CAMERA output to Neutral Monoisotopic Mass
convert
CAMERA
convert
CAMERA
10.3 years ago
Charles Determan Jr
▴ 140
0
votes
0
replies
1.2k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray
Proteomics
limma
Category
CAMERA
GSVA
Microarray
Proteomics
limma
Category
10.5 years ago
Pekka Kohonen
▴ 190
1
vote
0
replies
1.0k
views
Meta Analysis on CAMERA results
limma
camera
cohen d
meta analysis
7.2 years ago
Andy91
▴ 60
0
votes
0
replies
1.2k
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010)
Proteomics
CAMERA
Proteomics
CAMERA
13.9 years ago
Amandeep Sidhu
▴ 20
0
votes
0
replies
1.1k
views
CAMERA error - isotopeProportionFits
camera
metabolomics
6.3 years ago
bhgyu
▴ 30
0
votes
0
replies
1.2k
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010
Proteomics
CAMERA
Proteomics
CAMERA
14.0 years ago
Amandeep Sidhu
▴ 20
0
votes
0
replies
615
views
Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast
camera
gene set testing
3.6 years ago
svlachavas
▴ 830
0
votes
0
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
GO
Network
rtracklayer
CAMERA
Gviz
GO
Network
rtracklayer
CAMERA
Gviz
10.1 years ago
Robert Ivanek
▴ 730
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray
limma
Category
CAMERA
GSVA
Microarray
limma
Category
CAMERA
GSVA
10.5 years ago
Gordon Smyth
50k
49 results • Page
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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