Showing : ChAMP • reset
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ChAMP installation issue
Cha ChAMP
updated 8 hours ago by 3.9k • written 16 hours ago by • 0
1
vote
4
replies
257
views
Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 21 days ago by 65k • written 25 days ago by • 0
1
vote
2
replies
169
views
Error in champ.load(): The following specified files do not exist
ChAMP
26 days ago • updated 25 days ago Sherin • 0
2
votes
6
replies
1.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 5 weeks ago by ▴ 180 • written 5 months ago by ▴ 10
1
vote
1
reply
320
views
Need Advice: Issue with ChAMP Analysis - Meth and UnMeth Matrix Pairing Error
MethylationArray methylationArrayAnalysis ChAMP
updated 11 weeks ago by 65k • written 11 weeks ago by • 0
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0
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224
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how to solve this error?
ChAMPdata ChAMP
12 weeks ago Meghana • 0
0
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2
replies
713
views
ChAMP - obtaining beta values using EPICv2 annotation
ChAMP EPICv2
updated 3 months ago by • 0 • written 4 months ago by • 0
0
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0
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163
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champ.load() from .idat files of GDC/TCGA dataset
TCGAbiolinks ChAMP
3 months ago Thalita • 0
0
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7
replies
670
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Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 5 months ago by ▴ 780 • written 5 months ago by • 0
2
votes
1
reply
614
views
ChAMP can't be found in Bioc3.18?
ChAMP
5 months ago ramonfallon ▴ 20
0
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7
replies
1.8k
views
error with champ.load
ChAMP champ methylation
updated 9 months ago by • 0 • written 4.1 years ago by • 0
0
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3
replies
683
views
ChAMP trouble reading csv file
ChAMP
written 9 months ago by • 0
1
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7
replies
1.8k
views
Error using champ.import
ChAMP EPICv2
updated 26 days ago by • 0 • written 10 months ago by • 0
1
vote
16
replies
3.4k
views
error in ChAMP loading file
ChAMP
updated 8 weeks ago by • 0 • written 18 months ago by • 0
3
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7
replies
5.4k
views
error with champ.load
champ
written 6.5 years ago by ▴ 10
0
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2
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1.2k
views
Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 11 months ago by • 0 • written 3.2 years ago by • 0
0
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3
replies
737
views
Error in champ.load() function
ChAMP
updated 12 months ago by 65k • written 12 months ago by • 0
0
votes
2
replies
724
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 12 months ago by 65k • written 12 months ago by • 0
0
votes
2
replies
1.0k
views
Error in loading file using champ.load() from ChAMP package
champ.load epicarray ChAMP methylationArrayAnalysis
12 months ago arisarkar88 ▴ 40
2
votes
5
replies
1.9k
views
Problem at champ.load
ChAMPdata ChAMP
updated 8 weeks ago by 65k • written 12 months ago by • 0
0
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0
replies
595
views
Unable to create pd file for ChAMP analysis
ChAMP
13 months ago Monalisa • 0
0
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0
replies
395
views
Cannot generate plots when calling ChAMP
ChAMP DMP.GUI
13 months ago Kan • 0
0
votes
2
replies
764
views
error in champ.SVD
svd methylation champ
updated 13 months ago by 3.9k • written 13 months ago by • 0
0
votes
3
replies
1.3k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 6.9 years ago by • 0
1
vote
1
reply
771
views
champ.load IDAT files from subdirectories
ChAMP
updated 14 months ago by ▴ 780 • written 14 months ago by • 0
0
votes
1
reply
1.2k
views
Trying to generate a pd file for ChAMP from idat files with no array or slide information in file names
ChAMP
updated 17 months ago by 65k • written 17 months ago by ▴ 10
1
vote
1
reply
673
views
In readLines(csvfile)
pipeline testdata ChAMP
updated 17 months ago by 65k • written 17 months ago by • 0
0
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1
reply
565
views
Champ.impute - myLoad not found
ChAMP
updated 19 months ago by ▴ 780 • written 19 months ago by • 0
0
votes
3
replies
1.2k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19 ChAMP minfi
2.1 years ago • updated 24 months ago ramonfallon ▴ 20
0
votes
1
reply
1.2k
views
champ.SVD() error, assumes standard class() function will return single string
ChAMP
updated 24 months ago by ▴ 780 • written 24 months ago by ▴ 20
0
votes
7
replies
2.7k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis ChAMP DMP DSS
updated 18 months ago by 65k • written 2.0 years ago by • 0
0
votes
4
replies
1.4k
views
Problem installing ChAMP package.
ChAMP
2.1 years ago Yu-min • 0
0
votes
1
reply
880
views
How to control for confounders in champ.DMP and champ.DMR?
ChAMP
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
votes
1
reply
808
views
Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 2.2 years ago by • 0 • written 2.2 years ago by • 0
1
vote
2
replies
2.6k
views
Error using ChAMP SVD analysis
ChAMP
updated 14 months ago by • 0 • written 2.8 years ago by • 0
0
votes
0
replies
878
views
Error in champ.svd - function 'EstDimRMTv2' within champ.svd acting inconsistently?
minfiData ChAMP
2.3 years ago behr201 • 0
0
votes
3
replies
1.1k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 2.4 years ago by ▴ 780 • written 2.4 years ago by • 0
0
votes
0
replies
841
views
Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
2.5 years ago Paulina • 0
3
votes
4
replies
8.7k
views
Problem loading R packages on MacBook Pro
newpackage ChAMP
updated 20 months ago by • 0 • written 2.5 years ago by • 0
0
votes
2
replies
864
views
problems opening ChAMP
ChAMP
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
votes
1
reply
1.1k
views
error in champ.norm
champ.norm ChAMP
updated 2.6 years ago by ★ 3.9k • written 2.6 years ago by • 0
0
votes
0
replies
765
views
ChAMP.CNA analysis
CopyNumberPlots ChAMP CopyNumberVariation CopyNumberVariationData
2.7 years ago FWNL15 • 0
0
votes
2
replies
1.2k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
2.7 years ago Jinyue • 0
0
votes
5
replies
1.6k
views
Loading ChAMP IdatFiles with two different ArrayTypes
ChAMP
updated 2.8 years ago by ▴ 280 • written 2.8 years ago by • 0
0
votes
6
replies
3.4k
views
Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
2.8 years ago FWNL15 • 0
1
vote
1
reply
1.4k
views
How to solve the error in running champ.DMP()
ChAMP
updated 3.0 years ago by ▴ 780 • written 3.0 years ago by ▴ 10
2
votes
1
reply
1.1k
views
How to save results of each step from ChAMP pipeline?
Bioconductor ChAMP
updated 3.0 years ago by ▴ 280 • written 3.0 years ago by ▴ 10
2
votes
1
reply
1.3k
views
How to download the ChAMP dependency ChAMPdata
ChAMP ChAMPdata
updated 3.0 years ago by 3.9k • written 3.0 years ago by ▴ 10
0
votes
2
replies
1.4k
views
champ.SVD() : Error in while (step == 0) { : missing value where TRUE/FALSE needed
methylationArrayAnalysis EPICarray ChAMP Champ.SVD
3.1 years ago arisarkar88 ▴ 40
0
votes
2
replies
880
views
Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.3 years ago sissialva21 • 0
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Comment: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by alex.pico ▴ 20
Hi Matthew. Happy to help. The error message you are getting is indeed not very helpful. It's just saying that the CyREST return obj "res" …
Comment: ChipQC 'names' attribute [9] must be the same length as the vector [2]' by bandconductor • 0
thanks! you have saved me so much time
Comment: Problem finding certain variables when importing a public database GSE73103 by Guido Hooiveld ★ 3.9k
FWIW: when I would like to make use of publicly available data, I always use the website to explore which metadata is submitted to GEO (and…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k
This is `blockLength=200000`, and providing `seg=seg`? It's alright that it's not identical. In the bootstrapped data, you will now have l…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Votes
Answer: ChipQC 'names' attribute [9] must be the same length as the vector [2]'
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
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