Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ChAMP
•
reset
2
votes
16
replies
2.6k
views
Methylation EPIC array: ChAMP package-champ.load added probes?
methylation
epic
champ
champ.load()
Methylation array
updated 4.4 years ago by
Yuan Tian
▴ 290 • written 4.4 years ago by
Ankit
▴ 20
1
vote
16
replies
3.4k
views
error in ChAMP loading file
ChAMP
updated 10 weeks ago by
hortense96
• 0 • written 18 months ago by
Giulia
• 0
0
votes
11
replies
6.3k
views
ChAMP input: Beta Matrix?
champ
dmr analysis
updated 3.4 years ago by
坤
• 0 • written 8.2 years ago by
Shicheng Guo
• 0
3
votes
9
replies
3.8k
views
champ.runCombat is failing: "invalid 'row.names' length"
champ
5.8 years ago
Gurkenkönig
▴ 10
0
votes
8
replies
1.4k
views
Error in running the ChAMP test runs from vignette
ChAMP
updated 7.6 years ago by
Yuan Tian
▴ 90 • written 7.6 years ago by
vd4mmind
• 0
1
vote
8
replies
2.8k
views
Error in Champ for Bioconductor analyzing Methlayion array data
champ
bioconductor
contrastmatrix
compare.group
updated 5.4 years ago by
Yuan Tian
▴ 290 • written 5.4 years ago by
erinkello
• 0
0
votes
7
replies
713
views
Deleted:No significant MVPs with a BH adjusted P-value below 0.05
ChAMP
updated 5 months ago by
Basti
▴ 780 • written 5 months ago by
486342583
• 0
1
vote
7
replies
1.9k
views
Error using champ.import
ChAMP
EPICv2
updated 5 weeks ago by
shilpa
• 0 • written 11 months ago by
medha.suman
• 0
3
votes
7
replies
5.5k
views
error with champ.load
champ
written 6.6 years ago by
o.giannakopoulou
▴ 10
2
votes
7
replies
2.5k
views
Blood cell composition adjustment in methylation EPIC array: ChAMP
MethylationArray
methylationArrayAnalysis
ChAMP
updated 7 months ago by
dorota.komar
• 0 • written 3.5 years ago by
Ankit
▴ 20
0
votes
7
replies
373
views
ChAMP installation issue
Cha
ChAMP
updated 4 days ago by
James W. MacDonald
66k • written 14 days ago by
e1271094
• 0
0
votes
7
replies
1.9k
views
error with champ.load
ChAMP
champ
methylation
updated 9 months ago by
mike
• 0 • written 4.1 years ago by
jkong
• 0
0
votes
7
replies
2.7k
views
ERROR happens when install "DSS" package
methylationArrayAnalysis
ChAMP
DMP
DSS
updated 19 months ago by
James W. MacDonald
66k • written 2.0 years ago by
16301050225
• 0
0
votes
6
replies
1.7k
views
Errors with champ.block
champ
champ.block
6.5 years ago • updated 6.4 years ago
tiroshamit
• 0
0
votes
6
replies
3.5k
views
Merge problems in R
methylationArrayAnalysis
ChAMP
MethylationArrayData
2.9 years ago
FWNL15
• 0
0
votes
6
replies
2.1k
views
ChAMP filter removing good samples from different batch of EPIC arrays.
minfi
champ
updated 6.8 years ago by
Yuan Tian
▴ 90 • written 6.8 years ago by
sarka.vorackova
• 0
3
votes
6
replies
2.1k
views
could not find function "champ.load"
ChAMP
champ 2.9.10
methylationepic
6.2 years ago
david.ch
• 0
2
votes
6
replies
1.6k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP
DMRcate
minfi
updated 7 weeks ago by
Tim Peters
▴ 180 • written 6 months ago by
rae.alshammari
▴ 10
2
votes
5
replies
1.9k
views
Error in Champ for Bioconductor performing GSEA analysis on Methlayion array data
champ
bioconductor
methyaltion
epic array
updated 5.3 years ago by
godai987654
• 0 • written 5.4 years ago by
erinkello
• 0
1
vote
5
replies
2.3k
views
error while using champ.svd() function
champ
5.4 years ago
sinha.puja
▴ 10
0
votes
5
replies
1.6k
views
Loading ChAMP IdatFiles with two different ArrayTypes
ChAMP
updated 2.8 years ago by
Yuan Tian
▴ 290 • written 2.8 years ago by
FWNL15
• 0
2
votes
5
replies
2.4k
views
DMRcate fails in ChAMP package
ChAMP
updated 7.2 years ago by
Yuan Tian
▴ 90 • written 7.2 years ago by
rasmus.rydbirk
▴ 10
2
votes
5
replies
2.0k
views
Problem at champ.load
ChAMPdata
ChAMP
updated 10 weeks ago by
James W. MacDonald
66k • written 13 months ago by
angel
• 0
0
votes
5
replies
2.1k
views
DNA methylation analysis without raw data IDAT files
r
illimina 450k methylation
minfi
champ
tcga
updated 5.8 years ago by
Yuan Tian
▴ 290 • written 5.8 years ago by
Beginner
▴ 60
3
votes
5
replies
2.2k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 3 months ago by
sup0903
• 0 • written 3.5 years ago by
Hongbii
• 0
2
votes
4
replies
317
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 4 weeks ago by
James W. MacDonald
66k • written 5 weeks ago by
Mirella Aurora
• 0
2
votes
4
replies
1.4k
views
bumphunter stalls on "Smoothing coefficients"
bumphunter
ChAMP
updated 5.0 years ago by
Yuan Tian
▴ 290 • written 5.0 years ago by
rasmus.rydbirk
▴ 10
1
vote
4
replies
2.5k
views
New version of ChAMP can not proceed through champ.DMP
champ
6.8 years ago
sarka.vorackova
• 0
3
votes
4
replies
8.8k
views
Problem loading R packages on MacBook Pro
newpackage
ChAMP
updated 20 months ago by
Yi Ping
• 0 • written 2.5 years ago by
Brendon
• 0
0
votes
4
replies
1.4k
views
Problem installing ChAMP package.
ChAMP
2.1 years ago
Yu-min
• 0
3
votes
4
replies
3.0k
views
Error while using champ.svd() function in subset of data
ChAMP
methylationepic
epicarray
epigenomics
updated 6.7 years ago by
rcavalca
▴ 140 • written 6.7 years ago by
karthikrpad
▴ 10
4
votes
4
replies
3.0k
views
How to remove unwanted probes before normalization in 450k data
minfi
450k
champ
rnbeads
updated 8.2 years ago by
James W. MacDonald
66k • written 8.2 years ago by
AST
▴ 60
0
votes
4
replies
1.1k
views
Taking relatedness among individuals into account in differential methylation analysis?
methylation
minfi
ChAMP
updated 5.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 5.8 years ago by
elgomez
• 0
1
vote
3
replies
1.5k
views
Error biocLite() newest version of ChAMP
R
bioclite
champ
6.1 years ago
rosa_hegi
▴ 10
0
votes
3
replies
1.5k
views
ChAMP Methylation analysis error code "could not find function champ.load"
champ
5.4 years ago
sinha.puja
▴ 10
0
votes
3
replies
712
views
ChAMP trouble reading csv file
ChAMP
written 10 months ago by
Keasiykan
• 0
0
votes
3
replies
1.2k
views
methylated/unmethylated media threshold (EPIC assay)
IlluminaHumanMethylationEPICanno.ilm10b3.hg19
ChAMP
minfi
2.2 years ago • updated 2.0 years ago
ramonfallon
▴ 20
0
votes
3
replies
1.9k
views
minfi release 1.8
SNP
Annotation
GO
probe
SNPlocs
PROcess
minfi
bumphunter
ChAMP
SNP
Annotation
GO
probe
updated 10.3 years ago by
Smeeta Shrestha
▴ 20 • written 10.3 years ago by
Tim Triche
★ 4.2k
0
votes
3
replies
1.2k
views
Error when running ChAMP package
champ
6.0 years ago
hazel.rogers
• 0
0
votes
3
replies
760
views
Error in champ.load() function
ChAMP
updated 12 months ago by
James W. MacDonald
66k • written 12 months ago by
Monalisa
• 0
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ
dmrcate
IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.9 years ago by
Yuan Tian
▴ 90 • written 6.9 years ago by
mia
• 0
0
votes
3
replies
1.4k
views
ChAMP filter bug when using beta matrix and pd as input
ChAMP
written 6.9 years ago by
allenyuchishing
• 0
2
votes
3
replies
2.3k
views
Error in champ.load (v. 2.8.3)
champ
ChAMP
updated 6.9 years ago by
Yuan Tian
▴ 90 • written 6.9 years ago by
rasmus.rydbirk
▴ 10
0
votes
3
replies
1.1k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata
ChAMP
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
mariat
• 0
0
votes
3
replies
1.3k
views
missing value in beta matrix after normalization wich champ.norm
champ
champs.svd()
champ.norm
6.2 years ago
jfertaj
▴ 30
2
votes
3
replies
1.6k
views
champ.impute doesn't update beta matrix
champ
impute
bioconductor
updated 7.2 years ago by
Yuan Tian
▴ 90 • written 7.2 years ago by
rasmus.rydbirk
▴ 10
0
votes
3
replies
7.7k
views
Downgrading R to an older version
MEDIPS
ChAMP
MEDIPS
ChAMP
updated 9.8 years ago by
Dan Tenenbaum
★ 8.2k • written 9.8 years ago by
Chong Kim San Allen
▴ 70
2
votes
3
replies
1.8k
views
ChAMP was installed and library in R, however, I can't use the function
champ
6.2 years ago
doctorjiangtao
▴ 10
0
votes
3
replies
1.4k
views
QC and normalization of 450K data from CSVs instead of IDATs
450K
CSV
normalization
minfi
ChAMP
updated 6.0 years ago by
Yuan Tian
▴ 290 • written 6.0 years ago by
Simone
▴ 190
1
vote
3
replies
2.8k
views
normalization combination of noob + BMIQ/Quantile
minfi
bmiq
noob
preprocessQuantile
champ
updated 3.7 years ago by
James W. MacDonald
66k • written 3.7 years ago by
Lin
▴ 50
50 results • Page
1 of 1
Recent ...
Replies
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Comment: Error in render R qmd document (could not find function "process")
by
ATpoint
★ 4.2k
This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…
Comment: GSVA function
by
michelafrancesconi8
• 0
When I log trasform my matrix after the DESeq2 normalization, I have some negative value, should I add a 1 to all my matrix? Thank you Mi…
Comment: Normalisation using clinical traits in RNA seq using DESeq2
by
sukeshinik5
• 0
Thank you, so much for the response. When we estimate factors of unwanted variable, which is the better options for factorisation of the va…
Votes
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
C: DiffBind Batch Effect
Awards
• All
Popular Question
to
Robert Castelo
★ 3.3k
Popular Question
to
kevin.rue
▴ 350
Popular Question
to
Wei Shi
★ 3.6k
Popular Question
to
Gordon Smyth
50k
Popular Question
to
jovel_juan
▴ 30
Locations
• All
Italy,
5 minutes ago
United States,
10 minutes ago
Germany,
12 minutes ago
United Kingdom,
21 minutes ago
United States,
43 minutes ago
Traffic: 840 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6