Showing : ChIPseeker • reset
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ChipSeeker Flanking gene annotation
chipseeker
7.4 years ago Lauma R ▴ 10
3
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4
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3.8k
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ChIPseeker/Question about ''annoatePeak' function and for Bioconductor AnnotationData Packages for L.japonicus
chipseeker Bioconductor AnnotationData Packages Lotus japonicus ChIPseq
updated 7.4 years ago by 68k • written 7.4 years ago by • 0
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covplot and getChrCov function
chipseeker
7.4 years ago xiaofeiwang198266 • 0
1
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3
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2.3k
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How to do functional enrichment analysis for only promoter regions using ChIPseeker
chipseeker chipseq
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 10
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How to get the genome distribution in proportion of promoter, 1st exon, other exon, 1st intron, other intron, distal intergenic, etc from a species
chipseeker
7.5 years ago bright602 • 0
3
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6
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2.4k
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ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
7.6 years ago 94133 • 0
1
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1
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2.7k
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Error: package or namespace load failed for 'ChIPseeker' in dyn.load(file, DLLpath = DLLpath
chipseeker
7.7 years ago liucz200904 • 0
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1
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1.5k
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How does vennplot() within Chipseeker define overlaps?
chipseeker vennplot
7.7 years ago kevin.potter12 • 0
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979
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Error in getGenomicAnnoStat(peak.gr) : object 'plab' not found
ChIPseeker
updated 7.9 years ago by ★ 1.2k • written 7.9 years ago by • 0
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3
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2.9k
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"input object should be a named list" error in ChIPseeker
ChIPseeker named list error plotAnnoBar plotDistToTSS vennplot
updated 8.0 years ago by ★ 1.2k • written 8.0 years ago by • 0
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0
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1.4k
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problem on getpromoters on hg38
chipseeker ChIPseeker
8.0 years ago jarod_v6@libero.it ▴ 40
0
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3
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3.0k
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custom background list for ReactomePA
reactomepa chipseeker Guangchuang Yu
8.1 years ago andrew.gehrke • 0
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2
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3.7k
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custom annotation in annotatePeak
chipseeker Guangchuang Yu
8.1 years ago andrew.gehrke • 0
5
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7
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3.2k
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ChIPSeeker enrichPeakOverlap external dataset downloads
chipseeker chipseq chip
updated 8.2 years ago by ★ 1.2k • written 8.2 years ago by ▴ 60
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2.4k
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Intergenic assigned to genes by ChIPseeker
chipseeker txdb.mmusculus.ucsc.mm10.knowngene
8.2 years ago doan.dinh • 0
0
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1
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3.2k
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how to define the downstream range in ChIPseeker
ChIPseeker H3K27me3 chipseq chipseeker
updated 8.3 years ago by ★ 1.2k • written 8.3 years ago by ▴ 10
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0
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1.4k
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Removing/combining specific annotation categories in ChIPSeeker plots/analysis
chipseeker chipseq annotation
8.3 years ago rbronste ▴ 60
2
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3
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3.8k
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ChIPseeker peak annotation tssRegion
chipseeker annotation chipseq
8.3 years ago lifeng.liu.biology ▴ 10
3
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1
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2.0k
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chipseeker annotation of focused genic regions
chipseeker annotatepeak
updated 8.3 years ago by ★ 1.2k • written 8.3 years ago by • 0
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0
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1.6k
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Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
8.4 years ago rbronste ▴ 60
2
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1
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3.8k
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ChIPseeker mapping between keys and columns
chipseeker chipseq
updated 8.4 years ago by ▴ 690 • written 8.4 years ago by ▴ 60
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1
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2.1k
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Chip-seq peak annotation [Chipseeker]
chipseeker chip-seq annotation Guangchuang
updated 8.7 years ago by ★ 1.2k • written 8.7 years ago by • 0
0
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2
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1.6k
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What is the confidence interval in ChIPseeker::plotAvgProf?
chipseeker
8.9 years ago enricoferrero ▴ 680
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1
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2.5k
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ChIPseeker TSS plot
chipseeker plotAvgProf
updated 9.0 years ago by ★ 1.2k • written 9.1 years ago by • 0
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1
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1.7k
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ChIPseeker : definition of each genomic location in annotatepeak
chipseeker
updated 9.2 years ago by ★ 1.2k • written 9.2 years ago by • 0
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6
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3.0k
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Chipseeker is unavabile on Linux CentOS7 ?
Bioconduct or Chipseeker CentOS7 Linux installation
updated 9.3 years ago by ★ 1.2k • written 9.3 years ago by • 0
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1
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2.1k
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ChIPseeker, read multiple peak files
chipseeker
updated 9.4 years ago by 68k • written 9.4 years ago by • 0
0
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1
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1.7k
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How to show the fraction of peaks in CDS regions using ChIPseeker
chipseeker
updated 9.4 years ago by ★ 1.2k • written 9.4 years ago by • 0
0
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3
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1.5k
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ChIPseeker read count calculation
chipseeker plotAvgProf
updated 9.4 years ago by ★ 1.2k • written 9.4 years ago by • 0
0
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2
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3.7k
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ChIPseeker annotatePeak definition
chipseeker
updated 9.5 years ago by ★ 1.2k • written 9.5 years ago by ▴ 140
0
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8
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2.7k
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significance of ChIPseq peak overlap
chipseeker
updated 9.7 years ago by ★ 1.2k • written 9.7 years ago by ▴ 10
3
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4
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2.8k
views
ChIPseeker::vennplot() fails with Error in ss[[1]] : subscript out of bounds
chipseeker venn vennplot genomicranges granges
9.7 years ago enricoferrero ▴ 680
0
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1
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1.9k
views
ChIPseeker gene body plot
chipseeker visualization
updated 9.7 years ago by ★ 1.2k • written 9.7 years ago by ▴ 50
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1
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1.8k
views
[ChIPseeker; feature request] More flexibility in specifying the TSS region
ChIPseeker featurerequest tss
updated 10.0 years ago by ★ 1.2k • written 10.0 years ago by ▴ 40
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0
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1.8k
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getTagMatrixList question from ChIPSeeker package
chipseeker
10.2 years ago Ana.SastrePerona • 0
1
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11
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3.9k
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ChIPseeker question: provide custom csAnno to plots
chipseeker
10.3 years ago francesca casalino ▴ 50
0
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2
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2.0k
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Annotation within ChIPSeeker mismatch geneId and annotation column
ChIPseeker
10.4 years ago n.kreim ▴ 20
3
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10
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6.0k
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ChIPseeker question: enrichPeakOverlap to find enrichment of genomic annotations in peaks from GRanges
chipseeker
updated 10.4 years ago by ★ 1.2k • written 10.4 years ago by ▴ 50
1
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9
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5.4k
views
Question about ChiPseeker: plot other values in plotAvgProf2
ChiPseeker
updated 10.4 years ago by ★ 1.2k • written 10.4 years ago by ▴ 50
1
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4
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3.1k
views
ChIPseeker: Is it possible to create heatmaps / metagene plots without being centered on the TSS?
chipseq chipseeker exon start site
updated 10.4 years ago by ★ 1.2k • written 10.4 years ago by • 0
1
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3
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2.0k
views
ChIPseeker Error: Attempting to annotatePeaks
ChIPseeker software error
updated 10.4 years ago by ★ 1.2k • written 10.4 years ago by • 0
7
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11
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6.7k
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annotatePeak() in ChIPseeker - how long does it take to run?
annotatePeak chipseeker chipseq org.Mm.eg.db TxDb.Mmusculus.UCSC.mm9.knownGene
updated 10.4 years ago by 25k • written 10.6 years ago by • 0
2
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4
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1.7k
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Quantifying peaks corresponding to a purticular feature
chipseeker
10.7 years ago snigdhapola • 0
0
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3
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2.5k
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Chipseeker : problem running Chipseeker to ENCODE datasets
chipseeker
updated 10.8 years ago by ★ 1.2k • written 10.8 years ago by • 0
2
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6
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3.3k
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ChIPseeker: covplot function: error with some ENCODE data sets
chiPseeker covplot ENCODE ChIpseq
10.9 years ago • updated 10.8 years ago sarabusquets88 • 0
0
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0
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1.7k
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error running Chipseeker
annotation chipseeker
updated 11.4 years ago by 25k • written 11.4 years ago by • 0
0
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1
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4.5k
views
ChIPseeker: Error in annotatePeak
Sequencing GO annotate ChIPseeker Sequencing GO annotate ChIPseeker
11.8 years ago António Miguel de Jesus Domingues ▴ 510
97 results • Page 2 of 2
Recent ...
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Answer: Inconsistencies between accessor functions for TxDb databases with selected seql by a2a2hd42aa • 0
Technical inconsistencies in database accessors can disrupt your workflow, but finding a reliable source to download online mobile games sh…
Comment: Can sample-level weights be used when analysing GSVA scores in limma? by A.Barden ▴ 20
Thanks both for this useful information.
Comment: Reproducibility of code in various Bioconductor versions by Gordon Smyth 53k
SNPlocs.Hsapiens.dbSNP155.GRCh38 is available for download from the same location as always. It has not changed since Bioc 3.20: Presumabl…
Comment: Changing multiple display parameters of a specific exon in GeneRegionTrack by a2a2hd42aa • 0
Similarly, for structural complexity in the [He777 Game][1] APK, having precise control over every detail is what makes a high-performance …
Answer: Issue loading and downloading Bioconductor 3.22 packages after update by strawberry3 • 0
Hi, thank you all for the advice. Using James's advice, I managed to install SNPlocs.Hsapiens.dbSNP155.GRCh38, but it took almost half an …
Votes
Do I map probes to gene symbols BEFORE or AFTER differentially expressed gene analysis?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Can sample-level weights be used when analysing GSVA scores in limma?
Comment: Can sample-level weights be used when analysing GSVA scores in limma?
Answer: Issue loading and downloading Bioconductor 3.22 packages after update
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