Showing : ChipQC • reset
5
votes
11
replies
2.1k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 6.5 years ago by ▴ 420 • written 6.5 years ago by ▴ 10
5
votes
3
replies
2.0k
views
ChIPQC error: "if (nrow(pv$binding) > 0) { : argument is of length zero"
chipqc
7.8 years ago Danielle Denisko ▴ 30
4
votes
8
replies
2.3k
views
ChIPQC v1.4 fails uninformatively where version 1.2 works fine
chipqc
updated 8.8 years ago by ★ 5.2k • written 9.0 years ago by ▴ 140
4
votes
6
replies
2.0k
views
ChIPQC GRCh38 usage yields "Unsupported annotation:hg38"
chipqc ChIPQC
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by ▴ 50
4
votes
2
replies
1.3k
views
ChIPQC : ChIPQCreport(experiment) swap memory overload
ChIPQC ChIPQCreport
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 50
4
votes
2
replies
1.7k
views
Confusing error when running ChIPQC
chipqc chipseq
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by ★ 7.9k
4
votes
8
replies
2.2k
views
ChIPQC and/or Diffbind - retrieving normalized read counts for peaks from single sample
DiffBind ChIPQC
8.2 years ago JD ▴ 10
4
votes
13
replies
3.7k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 15 months ago by ★ 5.2k • written 22 months ago by • 0
3
votes
6
replies
14k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 19 months ago by • 0 • written 7.7 years ago by ▴ 10
3
votes
7
replies
2.4k
views
ChIPQC for a single sample (disabling facets)
ChipQc chipqc
7.8 years ago Coby Viner ▴ 50
3
votes
1
reply
3.2k
views
creating custom genome annotation for the ChIPQC package
ChIPSeq QC ChIPQC
updated 8.7 years ago by ▴ 420 • written 8.7 years ago by ▴ 160
3
votes
6
replies
1.8k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
3
votes
9
replies
2.9k
views
ChIPQC and broadPeak input
chipseq chipqc chip-seq
8.6 years ago lindahove ▴ 10
3
votes
12
replies
3.8k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 6.7 years ago by ▴ 420 • written 9.1 years ago by • 0
3
votes
4
replies
1.4k
views
ChIPQC on samples without peaks and wrong total reads
chipqc
updated 7.6 years ago by ▴ 420 • written 7.6 years ago by ▴ 10
3
votes
1
reply
898
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
2.9 years ago Jonah ▴ 20
3
votes
6
replies
1.4k
views
ChIPQCreport yields a cryptic error if "Replicate" data is not specified
ChIPQC chipqc
updated 7.6 years ago by ★ 5.2k • written 7.6 years ago by ▴ 50
3
votes
5
replies
2.5k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
5.6 years ago molly_the_minotaur ▴ 30
3
votes
1
reply
1.1k
views
shiftApply verbosity (in ChIPQC)
ChIPQC s4vectors
updated 8.0 years ago by ▴ 420 • written 8.2 years ago by ▴ 140
2
votes
5
replies
1.5k
views
Error involving ChIPQCreport
ChIPQC
updated 7.1 years ago by ▴ 420 • written 7.1 years ago by • 0
2
votes
5
replies
2.0k
views
ChIPQC gives Error subscript contains out-of-bounds ranges with custom transcript database
chipqc
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by • 0
2
votes
1
reply
1.6k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 19 months ago by ★ 5.2k • written 20 months ago by • 0
2
votes
7
replies
2.0k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 4 months ago by • 0 • written 3.6 years ago by • 0
2
votes
4
replies
2.9k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 2.7 years ago by • 0 • written 4.9 years ago by ▴ 20
2
votes
2
replies
1.3k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 4.7 years ago by ▴ 20 • written 5.2 years ago by ▴ 10
2
votes
6
replies
2.2k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 5.6 years ago by ▴ 420 • written 5.6 years ago by ▴ 10
2
votes
5
replies
1.8k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 6.6 years ago by ★ 5.2k • written 6.7 years ago by ▴ 50
2
votes
1
reply
1.5k
views
ChIPQC with GRCh38/hg38 requires manual loading of hg38 annotation
chipqc
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 50
1
vote
2
replies
2.7k
views
'reached elapsed time limit' error on ChIPQC
ChIPQC
updated 7.8 years ago by 25k • written 7.8 years ago by • 0
1
vote
4
replies
2.1k
views
ChIPQC: reads counts in bam do not match ones from samtools flagstat
chipqc
updated 9.1 years ago by ▴ 420 • written 9.1 years ago by • 0
1
vote
4
replies
1.5k
views
ChIPQC error: Error in generating sample data
ChIPQC
updated 7.9 years ago by ★ 5.2k • written 7.9 years ago by ▴ 30
1
vote
2
replies
1.0k
views
ChIPQC report missing figures
chipqc software error
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 30
1
vote
3
replies
1.1k
views
ChIPQC installation does not force latest DiffBind version
chipqc diffbind chipqcreport
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 50
1
vote
3
replies
2.1k
views
ChipQC Error: first error: could not find function "seqlevels<-"
software error chipqc
6.8 years ago tirza.doniger ▴ 20
1
vote
3
replies
1.1k
views
ChIPQC : ChIPQCreport(dba_object) getting error when drawing plotFribl
ChIPQC
6.8 years ago ZheFrench ▴ 50
1
vote
1
reply
1.8k
views
ChIPQC bam and bed files question
chipqc
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
1
vote
3
replies
2.7k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 3.5 years ago by ★ 5.2k • written 6.2 years ago by ▴ 10
1
vote
7
replies
2.7k
views
ChipQC not loading files
ChipQC diffbind
updated 5.7 years ago by ▴ 420 • written 5.7 years ago by • 0
1
vote
1
reply
1.1k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
4.6 years ago ryleehackley • 0
1
vote
2
replies
798
views
ChIPQC: log2 or log10?
ChIPQC
2.8 years ago etiennedanis • 0
1
vote
2
replies
928
views
Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
21 months ago • updated 20 months ago etiennedanis • 0
0
votes
2
replies
1.0k
views
ChIPQC plots for input samples
chipqc
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by ▴ 140
0
votes
2
replies
1.1k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 17 months ago by • 0 • written 3.0 years ago by ▴ 50
0
votes
1
reply
2.0k
views
PCR bottleneck coefficient (PBC)
chipqc
updated 6.8 years ago by ★ 5.2k • written 6.8 years ago by ▴ 140
0
votes
3
replies
1.3k
views
ChiPQC run time error
ChiPQC
updated 6.8 years ago by ▴ 420 • written 6.8 years ago by • 0
0
votes
4
replies
1.6k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
6.7 years ago • updated 6.6 years ago jared.andrews07 ▴ 30
0
votes
4
replies
1.3k
views
ChIPQC plotCoverageHist() and plotCC() not showing inputs
ChIPQC plotCoverageHist plotCC input
7.2 years ago atisou • 0
0
votes
1
reply
1.5k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 6.6 years ago by ▴ 420 • written 6.6 years ago by ▴ 20
0
votes
0
replies
865
views
ChIPQC stops at chr3 for calculating shift
chipqc
6.6 years ago psudyant • 0
0
votes
0
replies
1.2k
views
ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
6.4 years ago nbkingsley • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh LOL. My markdown got edited by the markdown editor! What is between the p and 50 in the first case is the HTML for greater than or equal…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Ah, good point. You could instead try ``` > library(ggtext) > keyvals.shape = c(rep(3,10), rep(2,8)) > names(keyvals.shape) = ifelse(keyva…
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
India, 2 minutes ago
India, 13 minutes ago
WEHI, Melbourne, Australia, 30 minutes ago
The city by the bay, 44 minutes ago
France, 52 minutes ago
Traffic: 932 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6