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FlowCore
•
reset
0
votes
0
replies
109
views
Macsquant FCS in read.FCS & opencyto
FlowCytometry
flowWorkspace
flowCore
5 weeks ago
taylor.witte
• 0
1
vote
1
reply
251
views
FCS3.2 reading
flowWorkspace
flowCore
CytoML
updated 5 weeks ago by
SamGG
▴ 350 • written 10 weeks ago by
jarod
▴ 30
0
votes
0
replies
216
views
News:
Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity
flowCore
3 months ago
info
▴ 10
0
votes
6
replies
891
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS
flowCore
updated 4 months ago by
SamGG
▴ 350 • written 4 months ago by
das.traveller
• 0
1
vote
1
reply
371
views
How to read fcs3.2 files
flowCore
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
Gabriel
▴ 10
0
votes
2
replies
420
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec
read.FCS
flowCore
5 months ago
mrescan
• 0
0
votes
0
replies
374
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore
cytoMEM
9 months ago
aguirre
▴ 20
0
votes
2
replies
500
views
Unable to access Git links.
Source
flowCore
Repository
git
updated 12 months ago by
shepherl
3.8k • written 12 months ago by
dominic.r
• 0
0
votes
0
replies
347
views
Merging 2 staining panels
FlowCytometry
flowCore
14 months ago
michaela.gregorova13
• 0
0
votes
0
replies
489
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
14 months ago
pawel.malecki
• 0
2
votes
1
reply
888
views
How to modify a compensation matrix in an fcs file
flowCore
FlowCytometry
17 months ago
aguirre
▴ 20
0
votes
0
replies
548
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
17 months ago
Dennis.hinkel
• 0
2
votes
9
replies
1.4k
views
Error when plotting flow cytometry data
FlowCytometry
flowCore
ggcyto
updated 19 months ago by
SamGG
▴ 350 • written 19 months ago by
alex
• 0
0
votes
0
replies
731
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore
FlowCytometryData
flowTrans
flow
2.1 years ago
hamiltond
▴ 10
0
votes
0
replies
901
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore
FlowCytometryData
2.1 years ago
hamiltond
▴ 10
0
votes
0
replies
714
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.1 years ago
nmchavez
• 0
0
votes
0
replies
593
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore
flowDensity
2.1 years ago
nmchavez
• 0
0
votes
0
replies
543
views
Reducing/sampling number of FCS events
FlowCytometry
flowCore
2.3 years ago
markkelly1983
▴ 20
2
votes
1
reply
866
views
Difference in output of logicle transform in different languages
flowCore
updated 2.1 years ago by
Eduardo
• 0 • written 2.4 years ago by
markkelly1983
▴ 20
0
votes
0
replies
689
views
Job:
Bioconductor developer
FlowCytometry
flowCore
2.4 years ago
markkelly1983
▴ 20
0
votes
1
reply
688
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS
flowCore
2.5 years ago
Rainer
• 0
0
votes
1
reply
851
views
Undefined columns error R cytometry analysis
flowCore
ggcyto
FlowCytometryData
updated 2.6 years ago by
Jiang, Mike
★ 1.3k • written 3.0 years ago by
Elizabeth
• 0
0
votes
1
reply
1.4k
views
how to get MFI stats from data
flowCore
flowStats
flowUtils
flowWorkspace
updated 2.6 years ago by
Jiang, Mike
★ 1.3k • written 3.0 years ago by
Khai-Chuong
• 0
0
votes
1
reply
1.1k
views
Re-naming $PnS parameters
flowCore
updated 3.1 years ago by
SamGG
▴ 350 • written 3.1 years ago by
jasonemo
• 0
2
votes
3
replies
988
views
Getting number of datasets with flowCore
flowCore
updated 3.1 years ago by
SamGG
▴ 350 • written 3.1 years ago by
mark.holmes
▴ 10
1
vote
1
reply
1.3k
views
Error when using read.FCS
compensation
flowCore
FlowCore
read.FCS
updated 3.2 years ago by
SamGG
▴ 350 • written 3.2 years ago by
Pepijn
• 0
0
votes
0
replies
657
views
flowCore - linear transformation
cytofWorkflow
cytofworkflow
flowCore
3.4 years ago
GFM
▴ 20
1
vote
6
replies
1.3k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 3.5 years ago by
SamGG
▴ 350 • written 3.5 years ago by
Rainer
• 0
0
votes
8
replies
1.7k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow
flowCore
updated 7 months ago by
osayou
• 0 • written 3.5 years ago by
anders.tondell
▴ 30
3
votes
10
replies
2.3k
views
Reading multiple data segments from FCS 3.0 file
flowCore
flow cytometry
FCS 3.0
ncdfFlowSet
updated 23 months ago by
SamGG
▴ 350 • written 4.0 years ago by
alavy
▴ 30
0
votes
1
reply
686
views
FlowCore openCyto: problem with summary(result)
flowCore
openCyto
Summary
Result
Filter
updated 4.0 years ago by
Jake Wagner
▴ 310 • written 4.1 years ago by
noviello
• 0
2
votes
2
replies
1.5k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow
flowCore
ncdfFlowSet
read.FCS
updated 4.0 years ago by
Jake Wagner
▴ 310 • written 4.0 years ago by
alavy
▴ 30
4
votes
5
replies
1.1k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace
flowCore
openCyto
flowFrame
F-measure
updated 4.1 years ago by
Jake Wagner
▴ 310 • written 4.1 years ago by
stefankolling+github
• 0
0
votes
0
replies
577
views
Strange problem with parameter range when creating a flowFPModel
flowCore
flowFP
flowFPModel
4.2 years ago
palffy.karoly
• 0
0
votes
2
replies
919
views
flowCore not displaying FL gates
flowCore
updated 4.3 years ago by
Jiang, Mike
★ 1.3k • written 4.3 years ago by
rleenay
• 0
2
votes
4
replies
1.1k
views
Mathematical operations in FCS file
flowCore
flow cytometry
4.4 years ago
chandra.swarnendu
• 0
0
votes
1
reply
1.7k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 4.5 years ago by
Jiang, Mike
★ 1.3k • written 4.5 years ago by
gene_bioconductor
▴ 10
1
vote
3
replies
1.2k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
4.6 years ago
cahyasu88
• 0
1
vote
0
replies
853
views
Cell cycle analysis subG1
flowploidy
apoptosis
cell cycle
flowCore
4.7 years ago
nina.hahn
• 0
3
votes
2
replies
1.0k
views
flowWorkspace cannot load external data
flowWorkspace
external data
flowCore
4.7 years ago
Brent.OCarrigan
• 0
1
vote
2
replies
1.8k
views
flowCore issue: creating and applying new compensation matrix
compensate()
flowCore
4.8 years ago
rdlr
• 0
0
votes
1
reply
743
views
Issue creating transformed filter in flowCore
flowCore
updated 4.8 years ago by
Jake Wagner
▴ 310 • written 4.8 years ago by
npb27
• 0
4
votes
4
replies
1.3k
views
FCSTransTransform() implementation in flowCore
flowCore
FCSTrans
flow cytometry
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
Nik Tuzov
▴ 80
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore
fcs
flow cytommetry
matrix
conversion
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
apurva
• 0
2
votes
3
replies
1.7k
views
how to use the flowCore spillover function
flowCore
spillover
gatingset2FlowJO
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
k.teijgeler
• 0
1
vote
4
replies
1.6k
views
flowCore install missing a dependency?
flowCore
Installation
dependency
updated 4.9 years ago by
Jake Wagner
▴ 310 • written 4.9 years ago by
Robert Baer
▴ 70
0
votes
0
replies
734
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy
flowcore
flow cytometry
5.1 years ago
kovacik
• 0
1
vote
5
replies
1.7k
views
Flow cytometry optimization of transformation parameters
flow Cytometry
flowCore
flowTrans
5.1 years ago
carlos.x.martinez-fleites
• 0
1
vote
2
replies
962
views
gatingML examples needed
flowCore
flowUtils
gatingML
updated 5.2 years ago by
Jiang, Mike
★ 1.3k • written 5.2 years ago by
Andrew Box
▴ 10
1
vote
6
replies
2.3k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 5.2 years ago by
SamGG
▴ 350 • written 5.2 years ago by
OT
• 0
50 results • Page
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Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
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James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
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by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says ``` index: an index vector or a list of index vectors. …
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by
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• 0
Thanks James! That is a great tip. cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design) Error in Stat[iset]…
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by
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65k
The first step should be to read the help page, which says ``` Usage: ## Default S3 method: camera(y, index, design, cont…
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James W. MacDonald
65k
The description of the analysis says there are 120 genes at a 1.5 fold change and a p<0.05. They don't mention any multiplicity correction.…
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Answer: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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Nominations for Bioconductor Awards 2024!
Answer: Improving the design matrices vignette in RNAseq123
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