Showing : GENESIS • reset
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Conditional analysis
GENESIS
19 months ago SuperDad • 0
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1
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792
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GENESIS: error in crossprod
GENESIS
22 months ago Stephanie M. Gogarten ▴ 890
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2
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1.2k
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GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 2.1 years ago by ▴ 890 • written 2.1 years ago by • 0
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2
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955
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SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 2.1 years ago by ▴ 890 • written 2.2 years ago by • 0
1
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1
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1.2k
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HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 2.2 years ago by 68k • written 2.2 years ago by ▴ 10
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732
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How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
2.2 years ago mailtoshivam13 • 0
2
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5
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1.5k
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assocTestSingle output with GxE
GENESIS
updated 2.5 years ago by ▴ 890 • written 2.5 years ago by • 0
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1
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722
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Reference categories for factors
assocTestSingle GENESIS
written 2.9 years ago by • 0
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2
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1.3k
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kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
3.2 years ago Monica • 0
1
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2
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5.6k
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Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.9 years ago by • 0 • written 6.1 years ago by • 0
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1
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1.3k
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Approximations to Est and Est.SE in GENESIS
GENESIS
5.1 years ago Stephanie M. Gogarten ▴ 890
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0
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1.1k
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X chromosome analyses for males in GENESIS
GENESIS
5.1 years ago Stephanie M. Gogarten ▴ 890
0
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3
replies
2.2k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 5.4 years ago by ▴ 890 • written 5.4 years ago by • 0
0
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1
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1.2k
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using GENESIS R package with non-human species
genesis gwastools
5.4 years ago Stephanie M. Gogarten ▴ 890
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2
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1.5k
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Association testing model in GENESIS
genesis
updated 5.5 years ago by ▴ 890 • written 5.5 years ago by • 0
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1
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1.8k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 5.5 years ago by ▴ 890 • written 5.6 years ago by • 0
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8
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2.4k
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Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
5.9 years ago alipka ▴ 10
2
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1
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1.1k
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 5.9 years ago by ▴ 890 • written 5.9 years ago by ▴ 10
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0
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1.2k
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Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
6.1 years ago astridite • 0
2
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1
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1.2k
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Why did the Wald test disappear from GENESIS?
genesis
6.1 years ago Stephanie M. Gogarten ▴ 890
1
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3
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1.8k
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Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
6.2 years ago Corey.Cox • 0
1
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1
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1.4k
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Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 6.2 years ago by ▴ 890 • written 6.2 years ago by ▴ 10
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6
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2.3k
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Interpreting the output of score test using GENESIS
genesis output score
updated 6.2 years ago by ▴ 890 • written 6.2 years ago by ▴ 10
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4
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1.6k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 6.3 years ago by ▴ 890 • written 6.3 years ago by • 0
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3
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2.7k
views
Can't install Genesis
Genesis Installation
updated 6.4 years ago by ★ 6.6k • written 6.4 years ago by ▴ 10
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3
replies
1.8k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.4 years ago by ▴ 70 • written 6.4 years ago by • 0
6
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11
replies
3.7k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 6.7 years ago by ▴ 890 • written 6.7 years ago by • 0
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1
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1.4k
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betas for binary outcome
genesis
6.8 years ago Stephanie M. Gogarten ▴ 890
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13
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3.5k
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GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 6.8 years ago by ▴ 890 • written 6.8 years ago by • 0
4
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2
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2.3k
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Imputed dosages in GENESIS
genesis gwastools seqarray
7.2 years ago • updated 6.9 years ago Stephanie M. Gogarten ▴ 890
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1
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1.4k
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.9 years ago naglemi ▴ 10
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1
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1.5k
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Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 7.1 years ago by ▴ 70 • written 7.1 years ago by ▴ 10
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1
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1.4k
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GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 7.2 years ago by ▴ 890 • written 7.2 years ago by • 0
0
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1
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1.3k
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Using previously calculated PCs in GENESIS
genesis snprelate
7.3 years ago Stephanie M. Gogarten ▴ 890
0
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1
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1.5k
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Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.3 years ago by ▴ 30 • written 7.3 years ago by ▴ 10
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1
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1.1k
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selecting SNPs and samples in GENESIS
genesis
7.4 years ago Stephanie M. Gogarten ▴ 890
0
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3
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1.8k
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GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.4 years ago by ▴ 70 • written 7.4 years ago by ▴ 10
3
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4
replies
2.1k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.4 years ago by ▴ 70 • written 7.4 years ago by ▴ 10
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8
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2.4k
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GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
7.7 years ago GENOMIC_region • 0
0
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7
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2.6k
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GENESIS: king2mat: subscript out of bounds
genesis
7.7 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
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Comment: Guitar R package requires update due to dependency GenomicFeatures by Frank • 0
Created by French developer Julien "Orteil" Thiennot, Cookie Clicker transformed the gaming landscape by introducing a new genre of idle ga…
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Clear visualization matters just as much in mobile entertainment as in data analysis. The [Try KK33 Game App now][1] focuses on clean layou…
Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
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If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Votes
Error in SummarizedExperiment(assays = SimpleList(counts = countData)
Answer: DESeq2 class error: superclass "ExpData" not defined in the environment of the o
Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
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