Showing : GENESIS • reset
0
votes
0
replies
383
views
Conditional analysis
GENESIS
17 months ago SuperDad • 0
0
votes
1
reply
746
views
GENESIS: error in crossprod
GENESIS
20 months ago Stephanie M. Gogarten ▴ 890
0
votes
2
replies
1.1k
views
GENESIS: Can not use GdsGenotypeReader to read a gds file
GENESIS GWASTools GDSfile
updated 23 months ago by ▴ 890 • written 23 months ago by • 0
0
votes
2
replies
897
views
SKAT-O method using GENESIS, question about range iterator using SeqVarWindowIterator
GENESIS SeqVarTools
updated 24 months ago by ▴ 890 • written 24 months ago by • 0
1
vote
1
reply
1.1k
views
HOW to FIX - PCAir excludes all my SNPs because there is no chromosome information
GENESIS autosome-only=FALSE? PCAir
updated 24 months ago by 68k • written 24 months ago by ▴ 10
0
votes
0
replies
688
views
How many ancestries to send in admixMap() when doing a two-way analysis?
GENESIS admixMap
2.0 years ago mailtoshivam13 • 0
2
votes
5
replies
1.4k
views
assocTestSingle output with GxE
GENESIS
updated 2.3 years ago by ▴ 890 • written 2.4 years ago by • 0
0
votes
1
reply
691
views
Reference categories for factors
assocTestSingle GENESIS
written 2.7 years ago by • 0
0
votes
2
replies
1.2k
views
kinToMatrix creates an empty matrix (except for diagonal 0.5 values)
kingToMatrix GENESIS Plants
3.0 years ago Monica • 0
1
vote
2
replies
5.4k
views
Why are my p-values deflated (GWAS)?
gwas genesis p-value q-q-plot
updated 4.7 years ago by • 0 • written 5.9 years ago by • 0
0
votes
1
reply
1.3k
views
Approximations to Est and Est.SE in GENESIS
GENESIS
4.9 years ago Stephanie M. Gogarten ▴ 890
0
votes
0
replies
1.0k
views
X chromosome analyses for males in GENESIS
GENESIS
5.0 years ago Stephanie M. Gogarten ▴ 890
0
votes
3
replies
2.1k
views
Alternate allele for GENESIS?
genesis effect allele association analysis
updated 5.2 years ago by ▴ 890 • written 5.2 years ago by • 0
0
votes
1
reply
1.1k
views
using GENESIS R package with non-human species
genesis gwastools
5.3 years ago Stephanie M. Gogarten ▴ 890
0
votes
2
replies
1.4k
views
Association testing model in GENESIS
genesis
updated 5.3 years ago by ▴ 890 • written 5.3 years ago by • 0
0
votes
1
reply
1.7k
views
GENESIS multiple gds files
genesis gds SeqVarData
updated 5.4 years ago by ▴ 890 • written 5.4 years ago by • 0
0
votes
8
replies
2.3k
views
Question: GENESIS: assocTestSingle() is not giving any output; guessing that it is arising from GenotypeBlockIterator()
Genesis
5.7 years ago alipka ▴ 10
2
votes
1
reply
1.1k
views
Does GENESIS match scan IDs for genotype and phenotype data?
GENESIS
updated 5.7 years ago by ▴ 890 • written 5.7 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Normalisation of Data before loading in TMixClust
rna-seq tmixclust k-means clustering gene expression genesis
5.9 years ago astridite • 0
2
votes
1
reply
1.2k
views
Why did the Wald test disappear from GENESIS?
genesis
6.0 years ago Stephanie M. Gogarten ▴ 890
1
vote
3
replies
1.8k
views
Error in fitNullMM from GENESIS package on highly-related samples
GENESIS
6.0 years ago Corey.Cox • 0
1
vote
1
reply
1.4k
views
Calculating the z score from wald test association results in GENESIS
GENESIS zscore wald
updated 6.1 years ago by ▴ 890 • written 6.1 years ago by ▴ 10
3
votes
6
replies
2.2k
views
Interpreting the output of score test using GENESIS
genesis output score
updated 6.1 years ago by ▴ 890 • written 6.1 years ago by ▴ 10
2
votes
4
replies
1.5k
views
Sporadic missingness with admixmmap
genesis admixmap
updated 6.1 years ago by ▴ 890 • written 6.1 years ago by • 0
0
votes
3
replies
2.6k
views
Can't install Genesis
Genesis Installation
updated 6.2 years ago by ★ 6.6k • written 6.2 years ago by ▴ 10
0
votes
3
replies
1.7k
views
GENESIS: ascertainment in GWAS
genesis fitnullmodel gwas ascertainment
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by • 0
6
votes
11
replies
3.7k
views
Genesis: doubts with admixMAPMM
genesis admixmap
updated 6.5 years ago by ▴ 890 • written 6.5 years ago by • 0
0
votes
1
reply
1.3k
views
betas for binary outcome
genesis
6.6 years ago Stephanie M. Gogarten ▴ 890
0
votes
13
replies
3.3k
views
GENESIS pcrelate() write gds file doesn't work
genesis pcrelate gds
updated 6.6 years ago by ▴ 890 • written 6.6 years ago by • 0
4
votes
2
replies
2.3k
views
Imputed dosages in GENESIS
genesis gwastools seqarray
7.1 years ago • updated 6.7 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
1.3k
views
Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
6.7 years ago naglemi ▴ 10
1
vote
1
reply
1.4k
views
Difference between AssocTestMM (GENESIS) and EMMAX? Why results are different?
GENESIS GWAS AssocTestMM
updated 6.9 years ago by ▴ 70 • written 6.9 years ago by ▴ 10
1
vote
1
reply
1.3k
views
GENESIS pcrelate() to load gds file and continue where the function broke
genesis pcrrelate gds
updated 7.0 years ago by ▴ 890 • written 7.0 years ago by • 0
0
votes
1
reply
1.3k
views
Using previously calculated PCs in GENESIS
genesis snprelate
7.1 years ago Stephanie M. Gogarten ▴ 890
0
votes
1
reply
1.4k
views
Unable to build GDS with more than 255 scaffolds?
GENESIS GWAS GDS
updated 7.1 years ago by ▴ 30 • written 7.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
selecting SNPs and samples in GENESIS
genesis
7.2 years ago Stephanie M. Gogarten ▴ 890
0
votes
3
replies
1.7k
views
GENESIS: assocTestMM error for lack of sex chromosome info (not relevant for this species)
GENESIS assoctestmm GWAS
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
3
votes
4
replies
2.0k
views
Why is assocTestMM running with only a fraction of SNPs in genotype data?
LMM GWAS GENESIS assocTestMM
updated 7.3 years ago by ▴ 70 • written 7.3 years ago by ▴ 10
2
votes
8
replies
2.3k
views
GENESIS: PCAIR: Error in acc(object, NL[cnode]) : unmatched node provided
genesis pcair
7.5 years ago GENOMIC_region • 0
0
votes
7
replies
2.5k
views
GENESIS: king2mat: subscript out of bounds
genesis
7.5 years ago Stephanie M. Gogarten ▴ 890
40 results • Page 1 of 1
Recent ...
Replies
Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
Comment: bake() and cool() resulting in an empty table by Francesc • 0
Hi Catherine, thanks so much for using dar and for reporting this bug! We have identified the issue and pushed a fix to the dar repo (PR #…
Comment: Using DESeq2 for age prediction by ATpoint ★ 5.0k
You sure will find online tutorials on regression models / machine learning classifiers. The support site is for help with Bioconductor. Ch…
Comment: Using DESeq2 for age prediction by picasa1983 • 0
Thanks ! Do you have any idea how to do that ?
Answer: Using DESeq2 for age prediction by ATpoint ★ 5.0k
The package has no such inbuilt function but you are free to use the vst (or any normalized) counts to train a regression model or classifi…
Votes
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
DESeq2 for candidate gene analysis
Answer: DESeq2 for candidate gene analysis
Awards • All
Popular Question to Gordon Smyth 53k
Oracle to shepherl 4.2k
Popular Question to Matej • 0
Popular Question to Hervé Pagès 16k
Popular Question to Josef Frank • 0
Locations • All
New Zealand, 1 hour ago
The city by the bay, 3 hours ago
United States, 4 hours ago
United States, 7 hours ago
United States, 7 hours ago
Traffic: 1059 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6