Showing : GOsemsim • reset
8
votes
5
replies
2.8k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim gosemsim gene ontology
updated 7.1 years ago by • 0 • written 7.1 years ago by ▴ 60
3
votes
12
replies
3.4k
views
Trouble installing GOSemSim
GOSemSim S4Vectors
6.0 years ago sergi.picart ▴ 20
2
votes
2
replies
2.1k
views
Error: could not find function "godata"
gosemsim
6.7 years ago anton.kratz ▴ 60
1
vote
12
replies
4.1k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim Gene ontology semantic similarity across species
updated 8.3 years ago by ★ 1.2k • written 8.3 years ago by ▴ 10
1
vote
1
reply
1.4k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim mgeneSim
updated 8.9 years ago by ★ 1.2k • written 8.9 years ago by • 0
1
vote
2
replies
2.1k
views
GOSemSim problem for yeast proteins
GOSemSim yeast
updated 10.1 years ago by ★ 1.2k • written 10.1 years ago by ▴ 10
1
vote
1
reply
960
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim GOSemSim
updated 2.1 years ago by ▴ 760 • written 2.1 years ago by ▴ 10
1
vote
3
replies
1.5k
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim Dnet
5.7 years ago helenlong1 • 0
1
vote
1
reply
2.0k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu GOSemSim AnnotationForge
updated 4.9 years ago by ★ 4.0k • written 4.9 years ago by • 0
0
votes
1
reply
1.7k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim gosemsim
updated 8.0 years ago by ▴ 760 • written 9.5 years ago by ▴ 10
0
votes
4
replies
1.8k
views
problem of GOSemSim R package operation geneSim()
gosemsim
8.9 years ago bnembarekmarwa • 0
0
votes
5
replies
1.9k
views
Using mgeneSim with Ensembl ids
Ensembl GOsemsim GO semantic similarity
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by ▴ 10
0
votes
1
reply
1.4k
views
GO similarity by GOSemSim
gosemsim similarity
6.8 years ago ahatashkar • 0
0
votes
2
replies
1.5k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 6.3 years ago by ★ 1.2k • written 6.3 years ago by • 0
0
votes
0
replies
1.2k
views
GOSemSim - slow for BP terms
gosemsim go enrichment go semantic similarity
6.3 years ago nooshin ▴ 300
0
votes
1
reply
1.3k
views
Gene similarity by GOSemSim
gosemsim mgenesim
6.2 years ago athirak1986 • 0
0
votes
1
reply
1.0k
views
Using GoSemSim with other Ontologies
GOSemSim
updated 5.7 years ago by ▴ 760 • written 5.7 years ago by • 0
0
votes
1
reply
2.3k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.8 years ago Jenny Drnevich ★ 2.0k
0
votes
1
reply
1.3k
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim makeOrgPackage godata
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
0
votes
1
reply
1.3k
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim snomed semantic similarity
updated 4.5 years ago by 6.7k • written 4.5 years ago by • 0
0
votes
2
replies
2.7k
views
Can't install GO.db
GOexpress GO.db GOSemSim
2.4 years ago Chruut • 0
0
votes
0
replies
968
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.2 years ago Amandeep • 0
0
votes
3
replies
2.4k
views
using the goana function from edgeR
RNASeq edgeR GO GOSemSim
updated 3.2 years ago by 52k • written 3.2 years ago by ▴ 90
0
votes
1
reply
670
views
GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 20 months ago by ▴ 760 • written 20 months ago by • 0
0
votes
0
replies
1.1k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
12.6 years ago Guest User ★ 13k
0
votes
0
replies
225
views
Help using reduceSimMatrix with a custom annotation
AnnotationHub GOSemSim rrvgo
4 months ago daccar98 • 0
0
votes
0
replies
1.4k
views
GOSemSim mgeneSim GO.BP calculation time
GO GOSemSim GO GOSemSim
12.5 years ago Guangchuang Yu ★ 1.2k
0
votes
1
reply
1.4k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation GO Yeast biomaRt GOSemSim GOSim Annotation GO Yeast biomaRt GOSemSim GOSim
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 20
0
votes
1
reply
1.3k
views
GOSemSim comparison between species
Yeast GOSemSim Yeast GOSemSim
updated 12.8 years ago by ★ 8.2k • written 12.8 years ago by ▴ 10
0
votes
1
reply
1.6k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO SemSim GOSemSim GO SemSim GOSemSim
updated 12.7 years ago by ★ 1.2k • written 12.7 years ago by ★ 13k
0
votes
1
reply
1.7k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO GOSemSim GO GOSemSim
updated 11.3 years ago by ★ 1.2k • written 11.3 years ago by ★ 13k
0
votes
0
replies
1.9k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment genesetenrichment dose gosemsim
10.4 years ago Guangchuang Yu ★ 1.2k
0
votes
9
replies
3.3k
views
expired SQLiteConnection in GoSemSim package.
gene ontology GOSemsim
updated 9.7 years ago by ▴ 10 • written 10.0 years ago by • 0
0
votes
4
replies
2.3k
views
GOterm semantic similarity with non-reference organism
gosemsim go gene ontology
9.9 years ago cpcantalapiedra • 0
34 results • Page 1 of 1
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Comment: Merging EPICV1 and V2 betas by Garbayo • 0
[BitLife][1]: Life Simulator, usually referred to as BitLife, is a mobile life simulator game created by developer CandyWriter LLC on Septe…
Comment: Package developing and interoperation with Bioconductor by shepherl 4.1k
Using an example with SummarizedExperiment would satisfy the requirement; however the package should take the object directly and not just…
Comment: Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files by Sofia • 0
1. I have tried to update the packages and R but to no avail. I keep getting either this error or : `Error in H5Fclose(file$H5Identifier) …
Comment: Validity of SingleR with very small bulk RNAseq reference by Rohit • 0
Hi @nhaus So, what did you end up doing in such a scenario? I am facing a similar challenge
Comment: CpGs with genomic positions greater than the chromosome size in EPICv2? by Joshua Llano • 0
Thank you for your reply James. I was worried that it was my mistake.
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Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
Answer: Explannation for ROAST results
A: How DiffBind run PCA based on peak data?
Looking for equivalent EPIC chip v1 vs. v2 annotation variables
Properly constructing a hypergeometric test
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