Showing : GVIZ • reset
1
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2
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990
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 11 days ago by ▴ 180 • written 14 months ago by ▴ 10
0
votes
1
reply
200
views
GC content track on GVIZ
Gviz
updated 12 weeks ago by 65k • written 12 weeks ago by • 0
1
vote
3
replies
1.4k
views
Error in the UcscTrack() in package "Gviz"
DMR Methylation R Gviz
updated 5 months ago by ▴ 730 • written 3.0 years ago by • 0
0
votes
0
replies
346
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
6 months ago dbsgtk • 0
1
vote
0
replies
437
views
Gviz : UcscTrack
rtracklayer UCSC Gviz
6 months ago yujin ▴ 10
1
vote
3
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600
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer Gviz
updated 6 months ago by 16k • written 6 months ago by ▴ 10
0
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5
replies
1.7k
views
Gviz: UcscTrack and "GC Percent" information
Gviz coMET
17 months ago • updated 7 months ago Daniel E. Weeks ▴ 30
0
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3
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753
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz Saccharomyces_cerevisiae Gviz ideogram
updated 7 months ago by ▴ 730 • written 7 months ago by • 0
0
votes
2
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540
views
how to add annotation on individual track
Gviz
updated 11 months ago by ▴ 730 • written 11 months ago by ▴ 50
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0
replies
395
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
14 months ago Vinicius Henrique da Silva ▴ 40
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0
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631
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
14 months ago gilliangoobie • 0
0
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2
replies
1.2k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi Gviz
updated 21 months ago by 65k • written 21 months ago by • 0
0
votes
1
reply
968
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
22 months ago • updated 21 months ago rohitsatyam102 ▴ 20
2
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1
reply
1.3k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 23 months ago by 65k • written 23 months ago by • 0
1
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3
replies
1.8k
views
GVIZ giving error with loading hg38 genome
R Gviz
2.0 years ago RUser743 • 0
1
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2
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1.4k
views
Gviz and datatracks
Gviz
updated 2.2 years ago by • 0 • written 2.3 years ago by ▴ 670
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votes
0
replies
541
views
Color of 2nd exon
GViz
2.3 years ago underscore • 0
1
vote
1
reply
842
views
Gviz DataTrack data transformation on the fly
aggregation Gviz DataTrack
updated 2.3 years ago by ▴ 730 • written 2.3 years ago by ▴ 10
0
votes
0
replies
613
views
Modify y axis or add second y axis in Gviz
OverlayTrack Gviz
2.3 years ago Robert ▴ 10
4
votes
4
replies
2.2k
views
Gviz: ylim of the AlignmentsTrack
gviz gviz-package
updated 2.4 years ago by ▴ 120 • written 5.6 years ago by ▴ 10
0
votes
0
replies
832
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.4 years ago Ahdee ▴ 50
0
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0
replies
599
views
Y axis Data Track GVIZ
GVIZ
2.5 years ago • updated 2.4 years ago rbenel ▴ 40
1
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1
reply
1.5k
views
GVIZ on R not loading mm10 from UCSC
Gviz
2.6 years ago RUser743 • 0
0
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3
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924
views
Details AnnotationTrack swap densityplot and connectors
Gviz
2.6 years ago Hartorthereal • 0
1
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3
replies
1.3k
views
Gradient dotplot
Gviz
2.6 years ago sophieagger • 0
0
votes
0
replies
846
views
One read per line and other ordering of reads in Gviz
Gviz
2.7 years ago pillailab1 • 0
0
votes
4
replies
1.1k
views
window parameter in DataTrack function with a single sample
Gviz
2.7 years ago • updated 2.5 years ago rbenel ▴ 40
0
votes
1
reply
1.0k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 2.7 years ago by 65k • written 2.7 years ago by ▴ 10
0
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4
replies
1.2k
views
AlignmentsTrack empty plot
Coverage RNASeq plot Gviz
updated 15 months ago by 65k • written 2.8 years ago by • 0
1
vote
3
replies
1.1k
views
Can't produce a generegiontrack from my txdb anymore
gviz GenomicFeatures
2.8 years ago • updated 2.7 years ago A.J. ▴ 20
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0
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858
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
3.0 years ago gdeniz • 0
0
votes
0
replies
762
views
Gviz - Fixed width of title panel on left
Gviz
3.0 years ago rheery • 0
0
votes
0
replies
679
views
Gviz: set colors for UTRs
plot color Gviz utr
3.1 years ago ginlucks • 0
0
votes
3
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1.0k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
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0
replies
982
views
Gviz import lor reads from bam file
Gviz longreads
3.1 years ago ginlucks • 0
0
votes
1
reply
752
views
two tracks have the same axis
plot Gviz
3.5 years ago 腾 • 0
0
votes
2
replies
995
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation Alignment Gviz
3.5 years ago Vaibhav • 0
0
votes
2
replies
1.0k
views
Gviz vertical text labels
Gviz
updated 3.5 years ago by 65k • written 3.5 years ago by ▴ 90
0
votes
1
reply
884
views
Gviz, keeping strand information while zooming in
Gviz strand
3.6 years ago svenbioinf • 0
2
votes
2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.7 years ago by 65k • written 3.7 years ago by ▴ 10
0
votes
1
reply
898
views
Gviz package for plotting DMRs
Gviz DMRs
updated 3.8 years ago by ▴ 730 • written 3.8 years ago by • 0
0
votes
3
replies
2.1k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
3.8 years ago roman.hillje • 0
1
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3
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766
views
Highlight uniq transcripts in Gviz
Gviz
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
0
votes
2
replies
1.0k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 4.0 years ago by ▴ 730 • written 4.0 years ago by • 0
0
votes
2
replies
997
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz plotTracks
updated 4.2 years ago by ▴ 730 • written 4.2 years ago by • 0
0
votes
4
replies
1.1k
views
col.interactions.types for gviz InteractionTrack from the GenomicInteractions
GenomicInteractions gviz
updated 4.2 years ago by ▴ 140 • written 4.2 years ago by ▴ 30
0
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1
reply
875
views
How to modify centromere depiction in Gviz IdeogramTrack?
Gviz
updated 4.2 years ago by ▴ 730 • written 4.8 years ago by ▴ 10
1
vote
5
replies
1.0k
views
Plotting DMRs (Differentially Methylated Regions) using Gviz package in R
Gviz
updated 4.2 years ago by 65k • written 4.2 years ago by ▴ 10
0
votes
2
replies
845
views
BioMart webservice returned an invalid result
gviz biomart
4.3 years ago adrian86 • 0
0
votes
2
replies
871
views
I am wondering whether Gviz can support a plot like ggridges
Gviz
4.5 years ago Guandong Shang ▴ 40
50 results • Page 1 of 1
Recent ...
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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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