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Showing :
GViz
•
reset
0
votes
2
replies
134
views
Justify title track when rotation = 0
Gviz
gviz
written 11 days ago by
Xenia
• 0
0
votes
1
reply
103
views
Changing multiple display parameters of a specific exon in GeneRegionTrack
Gviz
written 11 days ago by
Xenia
• 0
0
votes
0
replies
329
views
Simple confidence intervall Gviz
Gviz
10 months ago
William
• 0
0
votes
1
reply
1.8k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate
Gviz
updated 13 months ago by
ming
• 0 • written 4.1 years ago by
Ahdee
▴ 60
0
votes
1
reply
741
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage
Gviz
sashimi
updated 8 months ago by
macdonaldfrench7286566
• 0 • written 16 months ago by
Marco
• 0
0
votes
3
replies
2.0k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 18 months ago by
Maryna
• 0 • written 2.4 years ago by
Michael
• 0
0
votes
3
replies
1.1k
views
Gviz and custom database
Gviz
updated 20 months ago by
James W. MacDonald
68k • written 20 months ago by
luigi.faino
• 0
1
vote
2
replies
2.4k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 21 months ago by
Tim Peters
▴ 230 • written 2.9 years ago by
jose.ramirez1
▴ 10
0
votes
1
reply
771
views
GC content track on GVIZ
Gviz
updated 24 months ago by
James W. MacDonald
68k • written 24 months ago by
ilaria.maurizio
• 0
1
vote
3
replies
2.7k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 2.2 years ago by
Robert Ivanek
▴ 750 • written 4.7 years ago by
ltzhou
• 0
0
votes
0
replies
911
views
Gviz::GeneRegionTrack error with standard TxDb: "adding seqlevels to a TxDb object is not supported"
Gviz
2.3 years ago
dbsgtk
• 0
1
vote
0
replies
1.1k
views
Gviz : UcscTrack
rtracklayer
UCSC
Gviz
2.3 years ago
yujin
▴ 10
1
vote
3
replies
1.2k
views
Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer
Gviz
updated 2.3 years ago by
Hervé Pagès
16k • written 2.3 years ago by
yujin
▴ 10
0
votes
5
replies
3.1k
views
Gviz: UcscTrack and "GC Percent" information
Gviz
coMET
3.1 years ago • updated 2.3 years ago
Daniel E. Weeks
▴ 30
0
votes
2
replies
1.0k
views
how to add annotation on individual track
Gviz
updated 2.7 years ago by
Robert Ivanek
▴ 750 • written 2.7 years ago by
xiaofeiwang18266
▴ 60
0
votes
0
replies
801
views
Coloring reads in AlignmentsTrack based on mapq
Gviz
2.9 years ago
Vinicius Henrique da Silva
▴ 40
0
votes
0
replies
1.3k
views
DMR.plot "Error: Too many stacks to draw"
DMRcate
Gviz
GV
3.0 years ago
gilliangoobie
• 0
0
votes
2
replies
2.0k
views
Gviz: Filtering AlignmentsTrack by read names
Gvi
Gviz
updated 3.5 years ago by
James W. MacDonald
68k • written 3.5 years ago by
anikajohn
• 0
0
votes
1
reply
1.8k
views
GViz plot coverage for multiple chromosome and multiple samples using BAM files and save them as a single pdf report
Gviz
3.6 years ago • updated 3.5 years ago
rohitsatyam102
▴ 20
4
votes
1
reply
2.7k
views
How to add gene symbol in GeneRegionTrack in Gviz
Gviz
updated 3.7 years ago by
James W. MacDonald
68k • written 3.7 years ago by
hsf378
• 0
1
vote
3
replies
3.0k
views
GVIZ giving error with loading hg38 genome
R
Gviz
3.8 years ago
RUser743
• 0
1
vote
2
replies
2.3k
views
Gviz and datatracks
Gviz
updated 3.9 years ago by
corinne_hutfilz
• 0 • written 4.0 years ago by
Bogdan
▴ 670
0
votes
0
replies
923
views
Color of 2nd exon
GViz
4.0 years ago
underscore
• 0
1
vote
1
reply
1.4k
views
Gviz DataTrack data transformation on the fly
aggregation
Gviz
DataTrack
updated 4.0 years ago by
Robert Ivanek
▴ 750 • written 4.1 years ago by
Robert
▴ 10
0
votes
0
replies
1.1k
views
Modify y axis or add second y axis in Gviz
OverlayTrack
Gviz
4.1 years ago
Robert
▴ 10
4
votes
4
replies
3.2k
views
Gviz: ylim of the AlignmentsTrack
gviz
gviz-package
updated 4.1 years ago by
Pariksheet Nanda
▴ 120 • written 7.4 years ago by
wsciekly.maciek
▴ 10
0
votes
0
replies
909
views
Y axis Data Track GVIZ
GVIZ
4.3 years ago • updated 4.2 years ago
rbenel
▴ 50
1
vote
1
reply
2.3k
views
GVIZ on R not loading mm10 from UCSC
Gviz
4.3 years ago
RUser743
• 0
0
votes
3
replies
1.6k
views
Details AnnotationTrack swap densityplot and connectors
Gviz
4.4 years ago • updated 4.3 years ago
Hartorthereal
• 0
1
vote
3
replies
2.0k
views
Gradient dotplot
Gviz
4.4 years ago
sophieagger
• 0
0
votes
0
replies
1.2k
views
One read per line and other ordering of reads in Gviz
Gviz
4.4 years ago
pillailab1
• 0
0
votes
4
replies
2.0k
views
window parameter in DataTrack function with a single sample
Gviz
4.4 years ago • updated 4.3 years ago
rbenel
▴ 50
0
votes
1
reply
1.6k
views
Gviz: change position of transcriptAnnotation
Gviz
updated 4.4 years ago by
James W. MacDonald
68k • written 4.5 years ago by
mar.pieraccioli
▴ 10
0
votes
4
replies
2.1k
views
AlignmentsTrack empty plot
Coverage
RNASeq
plot
Gviz
updated 3.0 years ago by
James W. MacDonald
68k • written 4.5 years ago by
karlaarz
• 0
1
vote
3
replies
1.8k
views
Can't produce a generegiontrack from my txdb anymore
gviz
GenomicFeatures
4.5 years ago
A.J.
▴ 20
0
votes
0
replies
1.4k
views
Combining dataTracks in Gviz by averaging or subtraction
Gviz
4.7 years ago
gdeniz
• 0
0
votes
0
replies
1.1k
views
Gviz - Fixed width of title panel on left
Gviz
4.7 years ago
rheery
• 0
0
votes
0
replies
1.2k
views
Gviz: set colors for UTRs
plot
color
Gviz
utr
4.8 years ago
ginlucks
• 0
0
votes
3
replies
1.6k
views
Gviz featureAnnotation disappear when zooming in
Gviz
updated 4.8 years ago by
James W. MacDonald
68k • written 4.8 years ago by
svenbioinf
• 0
0
votes
0
replies
1.4k
views
Gviz import lor reads from bam file
Gviz
longreads
4.8 years ago
ginlucks
• 0
0
votes
1
reply
1.2k
views
two tracks have the same axis
plot
Gviz
5.2 years ago
腾
• 0
0
votes
2
replies
1.6k
views
Can we align all the names of the transcripts (GeneRegionTrack) in the plotTracks() output?
Annotation
Alignment
Gviz
5.2 years ago
Vaibhav
• 0
0
votes
2
replies
1.6k
views
Gviz vertical text labels
Gviz
updated 5.3 years ago by
James W. MacDonald
68k • written 5.3 years ago by
Jake
▴ 90
0
votes
1
reply
1.4k
views
Gviz, keeping strand information while zooming in
Gviz
strand
5.3 years ago
svenbioinf
• 0
2
votes
2
replies
2.0k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz
protein
visualization
UcscTrack
protein domains
updated 5.4 years ago by
James W. MacDonald
68k • written 5.4 years ago by
paul.jaschke
▴ 10
0
votes
1
reply
1.5k
views
Gviz package for plotting DMRs
Gviz
DMRs
updated 5.5 years ago by
Robert Ivanek
▴ 750 • written 5.6 years ago by
ayeshatariq78
• 0
0
votes
3
replies
3.2k
views
Is it possible to group multiple bigWig files in Gviz DataTrack?
Gviz
5.6 years ago
roman.hillje
• 0
1
vote
3
replies
1.3k
views
Highlight uniq transcripts in Gviz
Gviz
updated 5.6 years ago by
Kevin Blighe
★ 4.0k • written 5.6 years ago by
peris_baba
• 0
0
votes
2
replies
1.6k
views
Gviz AlignmentsTrack: how to prevent reads from overlapping each other
Gviz
updated 5.7 years ago by
Robert Ivanek
▴ 750 • written 5.7 years ago by
ari.loytynoja
• 0
0
votes
2
replies
1.7k
views
Error in value[[3L]](cond) : 'end' must be <= 536870912 with Gviz::plotTracks
Gviz
plotTracks
updated 5.9 years ago by
Robert Ivanek
▴ 750 • written 5.9 years ago by
syliang
• 0
339 results • Page
1 of 7
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Comment: msmsTests, inconsistent sign between lFC.Av and LogFC
by
Ben
• 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis
by
James W. MacDonald
68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
by
varying.mastodon.isyn
• 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency)
by
Marina
• 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error
by
ansley.r.burtch
• 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
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