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Error when trying to create a heatmap with DESeq2
Heatmap
RNA-seqanalysis
heatmaps
DESeq2
updated 6 months ago by
Basti
▴ 780 • written 6 months ago by
langziv
• 0
0
votes
1
reply
901
views
edgeR heatmap construction and interpretation
heatmaps
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
ulin.1
• 0
0
votes
3
replies
603
views
Installing Gpart
gpart
heat
heatmaps
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Benjamin
• 0
0
votes
2
replies
647
views
Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by
sayite3688
• 0 • written 11 months ago by
dania.khalid
• 0
1
vote
1
reply
519
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors
heatmaps
heatmap.2
updated 13 months ago by
Konstantinos Yeles
▴ 80 • written 14 months ago by
Sooni
▴ 10
0
votes
1
reply
642
views
Heatmap of two conditions from the normalized gene count data
GeneExpression
heatmaps
updated 14 months ago by
ATpoint
★ 4.1k • written 14 months ago by
Amazing570
• 0
0
votes
2
replies
903
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
14 months ago
shuangshuang
• 0
0
votes
0
replies
850
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
15 months ago
gianni.drm
• 0
0
votes
1
reply
645
views
struggling to create a heatmap
DESeq2
heatmaps
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
m-bihie
▴ 10
2
votes
3
replies
1.0k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 15 months ago by
elefth.pavlos
▴ 40 • written 16 months ago by
Sooni
▴ 10
2
votes
2
replies
636
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2
heatmaps
16 months ago
Sooni
▴ 10
2
votes
5
replies
3.3k
views
How to identify top most variable genes from log2 normalized data?
supervised
edgeR
variance
RNASeq
heatmaps
updated 15 months ago by
Gordon Smyth
50k • written 16 months ago by
mohammedtoufiq91
▴ 10
2
votes
5
replies
1.6k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
17 months ago
Katharina
• 0
0
votes
1
reply
2.2k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 19 months ago by
Michael Love
42k • written 19 months ago by
Chiara
• 0
0
votes
3
replies
1.2k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2
DESEQ2
tximeta
SummarizedExperiment
heatmaps
updated 20 months ago by
James W. MacDonald
65k • written 20 months ago by
uhlkatie
• 0
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 20 months ago by
Zuguang Gu
▴ 260 • written 21 months ago by
תום
• 0
1
vote
1
reply
1000
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat
heatmaps
updated 23 months ago by
James W. MacDonald
65k • written 23 months ago by
MauriAndres
• 0
0
votes
2
replies
3.9k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
23 months ago
Bhavana
• 0
0
votes
3
replies
1.3k
views
Persisting error in making a heatmap
heatmaps
gplots
23 months ago
beslinail
• 0
1
vote
1
reply
789
views
Method for generating heatmap of overlapping DEGs?
heatm
heatmaps
updated 2.1 years ago by
James W. MacDonald
65k • written 2.1 years ago by
axe880
• 0
0
votes
1
reply
1.1k
views
Help me do a gene enrichment analysis
DESeq2
topGO
heatmaps
updated 2.7 years ago by
Guandong Shang
▴ 40 • written 2.7 years ago by
anasjamshed1994
• 0
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
2.9 years ago
Clara
• 0
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
trichorico
▴ 10
1
vote
1
reply
857
views
PCA rand heatmap of raw data
DESeq2
DiffSeq
PrincipalComponent
rlog
heatmaps
updated 3.2 years ago by
Michael Love
42k • written 3.2 years ago by
Fischer-philipp
▴ 30
4
votes
5
replies
1.4k
views
DEseq2 results
heatmaps
DEGs
PCA
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
MOHAMMAD
• 0
0
votes
0
replies
726
views
How to generate input file for Bioconductor package heatmaps
heatmaps
input file
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
bony.dekumar
▴ 10
26 results • Page
1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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