Showing : Heatmaps • reset
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760
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Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 6 months ago by ▴ 780 • written 6 months ago by • 0
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1
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901
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edgeR heatmap construction and interpretation
heatmaps
updated 7 months ago by 50k • written 7 months ago by • 0
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3
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603
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Installing Gpart
gpart heat heatmaps
updated 7 months ago by 65k • written 7 months ago by • 0
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2
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647
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Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by • 0 • written 11 months ago by • 0
1
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519
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 13 months ago by ▴ 80 • written 14 months ago by ▴ 10
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642
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 14 months ago by ★ 4.1k • written 14 months ago by • 0
0
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2
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903
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
14 months ago shuangshuang • 0
0
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0
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850
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
15 months ago gianni.drm • 0
0
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1
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645
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struggling to create a heatmap
DESeq2 heatmaps
updated 15 months ago by ★ 4.1k • written 15 months ago by ▴ 10
2
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3
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1.0k
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How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 15 months ago by ▴ 40 • written 16 months ago by ▴ 10
2
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2
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636
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
16 months ago Sooni ▴ 10
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5
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3.3k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 15 months ago by 50k • written 16 months ago by ▴ 10
2
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5
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1.6k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
17 months ago Katharina • 0
0
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2.2k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 19 months ago by 42k • written 19 months ago by • 0
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3
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1.2k
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Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 20 months ago by 65k • written 20 months ago by • 0
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1.5k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 20 months ago by ▴ 260 • written 21 months ago by • 0
1
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1000
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How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 23 months ago by 65k • written 23 months ago by • 0
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2
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3.9k
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Scaling for p.heatmap
heatmaps pheatmap scaling
23 months ago Bhavana • 0
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3
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1.3k
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Persisting error in making a heatmap
heatmaps gplots
23 months ago beslinail • 0
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789
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Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
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1.1k
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Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
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2
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1.7k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
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2.4k
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Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 10
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857
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PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.2 years ago by 42k • written 3.2 years ago by ▴ 30
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5
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1.4k
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DEseq2 results
heatmaps DEGs PCA
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
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726
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
26 results • Page 1 of 1
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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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