Showing : IRanges • reset
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1.1k
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How to retrieve ranges within 1000bp of each range in an IRanges object?
IRanges
updated 9.9 years ago by ★ 11k • written 9.9 years ago by ▴ 20
1
vote
1
reply
6.0k
views
Error trying to install GenomicRanges
cummerbund rtracklayer genomicranges s4vectors iranges
updated 9.9 years ago by ★ 6.6k • written 9.9 years ago by • 0
4
votes
1
reply
1.3k
views
IRanges, Partitioning by End function not found.
IRanges Biostrings
updated 10.0 years ago by 25k • written 10.0 years ago by ▴ 30
0
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9
replies
3.5k
views
IRanges: reduce(), findOverlaps(), and intersect() by group
iranges findoverlaps intersect group
10.0 years ago pesquivel • 0
1
vote
2
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1.3k
views
How to find similar ranges without algorithm="intervaltree"
granges genomicranges iranges
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 40
1
vote
4
replies
2.2k
views
chimera error after update to R 3.2
chimera IRanges
updated 10.1 years ago by ▴ 500 • written 10.5 years ago by ▴ 10
1
vote
9
replies
2.3k
views
Big data for IRanges: Combining reduce and gaps with dplyr functions
r iranges reduce gaps
10.1 years ago pesquivel • 0
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0
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1.6k
views
Big data for IRanges: Combining reduce and gaps with dplyr functions
r iranges reduce gaps
10.1 years ago pesquivel • 0
1
vote
1
reply
1.1k
views
Error with DNAStringSet
biostrings iranges
updated 10.1 years ago by 25k • written 10.1 years ago by • 0
4
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7
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2.8k
views
IRanges/ShortRead causing crash?
iranges shortread Biostrings
updated 10.1 years ago by 25k • written 10.1 years ago by ▴ 20
1
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2
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1.5k
views
Error: could not find function "PartitioningByEnd"
variantannotation iranges
updated 10.2 years ago by ★ 11k • written 10.2 years ago by ▴ 80
1
vote
5
replies
2.3k
views
'version' is missing error when running makeTxDbPackageFromUCSC
Cancer TranscriptDb IRanges GenomicFeatures Cancer TranscriptDb IRanges GenomicFeatures
updated 10.2 years ago by ▴ 10 • written 12.3 years ago by 16k
2
votes
10
replies
4.6k
views
Extract three types of intergenic regions
granges views annotation iranges
updated 10.2 years ago by ★ 1.7k • written 10.2 years ago by ▴ 50
1
vote
13
replies
3.4k
views
Rsamtools memory leak
rsamtools scanbam bam granges iranges
10.2 years ago mhills ▴ 10
0
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3
replies
1.6k
views
View of subsequences corresponding granges on +ve strand and rev. complementary of seq on -ve strand.
Views granges grangeslist iranges
updated 10.2 years ago by 16k • written 10.2 years ago by ▴ 50
3
votes
5
replies
1.7k
views
Problem with svn_time() function on IRanges package - trying to run "exomePeak" package
iranges
10.3 years ago • updated 10.2 years ago m.ghanatbari • 0
4
votes
2
replies
2.0k
views
How to find particular types of overlap with GenomicRanges
r genomicranges iranges
updated 10.3 years ago by ★ 11k • written 10.3 years ago by ▴ 50
1
vote
2
replies
1.1k
views
GRanges / IRanges maxgap behaviour change raises no warning
genomicranges granges iranges
updated 10.6 years ago by 16k • written 10.6 years ago by ▴ 40
0
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2
replies
1.2k
views
IRanges reduce Function Crashes R session
IRanges
updated 10.6 years ago by 16k • written 10.6 years ago by • 0
0
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1
reply
2.4k
views
Compilation problem installing IRanges
Iranges install
updated 10.6 years ago by 16k • written 10.6 years ago by • 0
1
vote
4
replies
2.1k
views
IRanges missing S4Vectors_defines.h
iranges s4vectors
updated 10.7 years ago by 16k • written 10.7 years ago by ▴ 10
2
votes
6
replies
3.4k
views
Shrink or Expand RLE
RLE iranges granges coverage
updated 10.7 years ago by 25k • written 10.7 years ago by ▴ 30
0
votes
2
replies
2.2k
views
Calculate the expression of gene
genomicranges iranges
updated 10.8 years ago by 68k • written 10.8 years ago by ▴ 20
3
votes
4
replies
2.4k
views
Introns at transcript expression level
genomicfeatures iranges
updated 10.8 years ago by 16k • written 10.8 years ago by ▴ 20
2
votes
5
replies
2.0k
views
making a RleViewsList object gets slow with many chromosomes
views iranges rle
10.9 years ago Janet Young ▴ 740
4
votes
3
replies
1.4k
views
stacking (partially or completely overlapping) GRanges/IRanges
granges iranges rnaseq
updated 10.9 years ago by 25k • written 10.9 years ago by ★ 2.1k
4
votes
2
replies
3.7k
views
extracting distance from Hits object
genomicranges iranges
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 140
3
votes
5
replies
3.9k
views
Element-wise setdiff when psetdiff fails for GenomicRanges
genomicranges iranges genomics
updated 10.9 years ago by ▴ 60 • written 11.0 years ago by ▴ 150
0
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1
reply
1.2k
views
IRanges installation problem
IRanges
11.0 years ago heyi xiao ▴ 360
2
votes
1
reply
1.7k
views
ChIPpeakAnno: Non-empty IRange object in case of no overlap
chippeakanno iranges
updated 11.0 years ago by ★ 4.3k • written 11.0 years ago by ▴ 30
0
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2
replies
1.6k
views
How to correct VCF Iranges from width=1 to correct end coordinate
VCF iranges End software error variantannotation
11.1 years ago tiffanie.moss • 0
4
votes
3
replies
2.8k
views
Overlap the snps
overlap snps granges iranges
updated 11.2 years ago by ★ 11k • written 11.2 years ago by ▴ 10
2
votes
1
reply
1.6k
views
Bioconductor utility with novel projects
Granges IRanges gff import.gff3 strand
updated 11.2 years ago by 16k • written 11.2 years ago by • 0
0
votes
6
replies
7.4k
views
GRanges: problem with multiple seqnames and seqlengths
GRanges seqnames seqlengths IRanges
11.3 years ago • updated 11.2 years ago topher.hamm • 0
0
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0
replies
1.4k
views
回复： XVector
Network Cancer IRanges XVector
11.3 years ago Hervé Pagès 16k
0
votes
1
reply
1.1k
views
IRanges findOverlaps potential bug?
IRanges IRanges
updated 11.3 years ago by ★ 11k • written 11.3 years ago by ▴ 20
0
votes
0
replies
1.5k
views
subseq with iranges on reverse strand
Cancer BSgenome BSgenome IRanges Cancer BSgenome BSgenome IRanges
11.4 years ago Hervé Pagès 16k
0
votes
6
replies
1.8k
views
iranges
IRanges IRanges
updated 11.4 years ago by ★ 6.8k • written 11.4 years ago by ▴ 680
0
votes
2
replies
855
views
Question about Rle
IRanges IRanges
updated 11.4 years ago by ★ 6.8k • written 11.4 years ago by ▴ 290
0
votes
0
replies
840
views
Types of overlap Iranges
IRanges IRanges
11.5 years ago Michael Lawrence ★ 11k
0
votes
4
replies
2.5k
views
Help with sliding window analysis on GRanges object
SNP IRanges SNP IRanges
updated 11.7 years ago by ★ 11k • written 11.7 years ago by ▴ 140
1
vote
3
replies
2.7k
views
views on Rle using GRanges object
RNASeq Coverage GO Cancer bridge rtracklayer IRanges RNASeq Coverage GO Cancer bridge
updated 11.8 years ago by 16k • written 11.8 years ago by ★ 11k
2
votes
4
replies
4.9k
views
Help with sliding window analysis on GRanges object
IRanges IRanges
11.8 years ago Stefano Iantorno ▴ 30
0
votes
8
replies
2.4k
views
CIGAR-aware coverage
Coverage IRanges Coverage IRanges
updated 11.8 years ago by ★ 11k • written 11.8 years ago by ▴ 30
0
votes
2
replies
2.2k
views
subsetting SummarizedExperiments - a proposal (or a hack?)
Cancer IRanges GenomicRanges PROMISE Cancer IRanges GenomicRanges PROMISE
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ★ 1.6k
3
votes
2
replies
7.0k
views
get promoter regions (bed format) of genes hg19
IRanges IRanges
updated 11.9 years ago by ★ 6.8k • written 11.9 years ago by ★ 13k
1
vote
1
reply
2.5k
views
RleList
convert IRanges convert IRanges
updated 12.0 years ago by ★ 11k • written 12.0 years ago by ▴ 20
0
votes
0
replies
2.0k
views
Easy way to convert CharacterList to character, collapsing each element?
Annotation Cancer Biostrings IRanges Annotation Cancer Biostrings IRanges
12.0 years ago Hervé Pagès 16k
0
votes
16
replies
5.1k
views
subset a RleList using GRanges object?
Coverage Cancer IRanges Coverage Cancer IRanges
updated 12.1 years ago by 16k • written 12.1 years ago by ▴ 740
0
votes
7
replies
2.8k
views
VariantTools installation problem: dependencies not available
IRanges GenomicRanges VariantTools XVector IRanges GenomicRanges VariantTools XVector
updated 12.1 years ago by ★ 11k • written 12.1 years ago by ▴ 360
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