Showing : Limma • reset
3
votes
13
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2.1k
views
Limma model.matrix design with batch effect and different life stages proportion estimates
DeconRNASeq limma
updated 19 months ago by • 0 • written 19 months ago by • 0
3
votes
2
replies
1.3k
views
Identifying DEGs using limma - NanoString GeoMx-NGS RNA Expression Data
NanoStringNCTools limma ExpressionData RNASeq edgeR
20 months ago mohammedtoufiq91 ▴ 10
1
vote
2
replies
876
views
Subsetting RNAseq data | voomaByGroup()
limma
20 months ago Anna • 0
1
vote
2
replies
1.2k
views
Multi-factorial, longitudinal disease progression analysis with unbalanced patient sampling - duplicateCorrelation or blocking?
rna-seq duplicateCorrelation limma voom
21 months ago • updated 20 months ago Dylan.Sheerin • 0
2
votes
2
replies
1.3k
views
error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
limma
21 months ago • updated 20 months ago user_bioinfo • 0
3
votes
10
replies
2.2k
views
Extremely small p-values using Limma for proteomic data
Proteomics limma
updated 20 months ago by 68k • written 21 months ago by • 0
3
votes
2
replies
1.2k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 20 months ago by 53k • written 21 months ago by • 0
0
votes
1
reply
769
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 21 months ago by 53k • written 21 months ago by • 0
3
votes
4
replies
1.1k
views
Help with error using camera() in limma
CAMERA limma
21 months ago Chris ▴ 20
0
votes
3
replies
1.0k
views
Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 21 months ago by 68k • written 21 months ago by • 0
0
votes
2
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845
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 21 months ago by • 0
0
votes
2
replies
1.4k
views
RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
21 months ago catv • 0
15
votes
17
replies
4.0k
views
Why p value inconsistent when using different number of pathway score?
limma
21 months ago Chris ▴ 20
5
votes
3
replies
1.7k
views
Log-cpm values from limma
limma edgeR RNASeq
updated 20 months ago by 53k • written 21 months ago by • 0
0
votes
7
replies
2.5k
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
21 months ago hortense96 • 0
1
vote
3
replies
1.0k
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 21 months ago by 53k • written 21 months ago by • 0
5
votes
9
replies
2.3k
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
21 months ago Chris ▴ 20
2
votes
6
replies
4.7k
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
22 months ago Chris ▴ 20
0
votes
1
reply
645
views
Limma design matrix only showing 3/4 treatments?
limma designmatrix
updated 22 months ago by 53k • written 22 months ago by • 0
0
votes
4
replies
956
views
Help with design.matrix
limma
22 months ago andrea.rodriguez-martinez13 • 0
1
vote
4
replies
1.1k
views
Using a change in a continuous explanatory variable to test changes in gene expression with limma
limma
updated 22 months ago by 53k • written 22 months ago by • 0
0
votes
2
replies
974
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
22 months ago Gimena • 0
15
votes
23
replies
5.6k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
22 months ago • updated 21 months ago Chris ▴ 20
2
votes
8
replies
1.5k
views
Microarray Limma Model fitting and DEG
limma DGEanalysis
updated 22 months ago by 53k • written 22 months ago by • 0
5
votes
25
replies
3.3k
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 22 months ago by 53k • written 22 months ago by ▴ 10
7
votes
6
replies
1.4k
views
Batch Effect Correction, Gene Filtering
DGE limma
updated 22 months ago by 53k • written 22 months ago by • 0
0
votes
1
reply
1.2k
views
Using splicing junction counts with edgeR/limma-voom
splicing limma edgeR
updated 22 months ago by 53k • written 22 months ago by • 0
0
votes
4
replies
1.2k
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
22 months ago Efra • 0
5
votes
7
replies
1.7k
views
DEG Filtering
MicroarrayData limma Genefiltering
updated 22 months ago by 53k • written 22 months ago by • 0
2
votes
2
replies
918
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma fit design RNASeq edgeR
22 months ago Sabiha ▴ 20
0
votes
2
replies
3.8k
views
RNA sequencing raw counts gene filtering
DESeq2 limma RNAseq
22 months ago kcarey • 0
1
vote
3
replies
1.1k
views
Cross-species analysis - how to compute the mid parent value?
DESeq2 limma edgeR DifferentialExpression
written 24 months ago by • 0
2
votes
6
replies
1.7k
views
limma: vooma mean-variance trend and data filtration
MicroarrayData limma
23 months ago • updated 22 months ago Lily Cheang ▴ 10
3
votes
8
replies
1.5k
views
Constrast for Time Course Experiments using Limma
limma
23 months ago dl17032000 • 0
8
votes
6
replies
1.4k
views
DGE analysis with LIMMA
limma
updated 23 months ago by 53k • written 23 months ago by • 0
0
votes
0
replies
620
views
Can I combine collinear variables into a single value
BatchEffect limma
23 months ago Harrsha • 0
0
votes
3
replies
1.3k
views
Differential enrichment analysis
limma Differentialenrichmentanalysis DEP
updated 23 months ago by 53k • written 23 months ago by • 0
0
votes
4
replies
1.1k
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
23 months ago mperalc • 0
3
votes
5
replies
1.9k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 23 months ago by 43k • written 23 months ago by ▴ 10
2
votes
1
reply
802
views
Limma Question
DESeq2 BatchEffect limma RNASeq
updated 23 months ago by 43k • written 23 months ago by ▴ 10
1
vote
2
replies
1.0k
views
Bioconductor unreachable?
limma
23 months ago edoardo • 0
0
votes
9
replies
2.4k
views
limma fo continous variables
limma DEGseq
updated 23 months ago by 68k • written 23 months ago by • 0
0
votes
2
replies
891
views
limma model matrix questions
limmaGUI limma pairedsamples
23 months ago whyw6948 • 0
0
votes
2
replies
1.2k
views
Limma with replicates at different time points
RNAs limma Differen
23 months ago alessandro • 0
2
votes
1
reply
847
views
Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 23 months ago by ★ 5.0k • written 23 months ago by • 0
1
vote
3
replies
1.8k
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 23 months ago by 53k • written 23 months ago by ▴ 10
0
votes
4
replies
1.2k
views
limma with interaction term
R biostatistics limma Epigenetics
24 months ago • updated 23 months ago Jitendra ▴ 10
3
votes
2
replies
1.2k
views
Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
24 months ago Shaimaa Gamal • 0
2
votes
3
replies
1.0k
views
Longitudinal analysis in Limma: Block=ID as random effect
limma
24 months ago COPD_Project • 0
2
votes
2
replies
830
views
Limma design for 3 replicated time courses comparing treatment vs placebo
design limma
24 months ago SamGG ▴ 360
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