Showing : Limma • reset
3
votes
2
replies
1.1k
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 17 months ago by 53k • written 18 months ago by • 0
0
votes
1
reply
707
views
Gene-by-sample covariates in limma
Metabolomics limma
updated 18 months ago by 53k • written 18 months ago by • 0
3
votes
4
replies
1.0k
views
Help with error using camera() in limma
CAMERA limma
18 months ago Chris ▴ 20
0
votes
3
replies
892
views
Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery ArrayExpress limma DifferentialExpression
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
2
replies
776
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma RNASeq voom
written 18 months ago by • 0
0
votes
2
replies
1.2k
views
RNAseq:Technical replicates from different batches
technicalReplicates BatchEffect limma RNASeq
18 months ago catv • 0
15
votes
17
replies
3.5k
views
Why p value inconsistent when using different number of pathway score?
limma
18 months ago Chris ▴ 20
5
votes
3
replies
1.5k
views
Log-cpm values from limma
limma edgeR RNASeq
updated 18 months ago by 53k • written 18 months ago by • 0
0
votes
7
replies
2.3k
views
Methylation Analysis experiment design using Limma
DNAMethylation limma methylationArrayAnalysis
19 months ago • updated 18 months ago hortense96 • 0
1
vote
3
replies
944
views
Why is my gene not significantly differentially expressed?
limmaGUI edgeR limma
updated 19 months ago by 53k • written 19 months ago by • 0
5
votes
9
replies
2.1k
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
19 months ago • updated 18 months ago Chris ▴ 20
2
votes
6
replies
4.2k
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
19 months ago Chris ▴ 20
0
votes
1
reply
579
views
Limma design matrix only showing 3/4 treatments?
limma designmatrix
updated 19 months ago by 53k • written 19 months ago by • 0
0
votes
4
replies
890
views
Help with design.matrix
limma
19 months ago andrea.rodriguez-martinez13 • 0
1
vote
4
replies
1.1k
views
Using a change in a continuous explanatory variable to test changes in gene expression with limma
limma
updated 19 months ago by 53k • written 19 months ago by • 0
0
votes
2
replies
855
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom Limma WGCNA
19 months ago Gimena • 0
15
votes
23
replies
5.2k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
19 months ago • updated 18 months ago Chris ▴ 20
2
votes
8
replies
1.4k
views
Microarray Limma Model fitting and DEG
limma DGEanalysis
updated 19 months ago by 53k • written 19 months ago by • 0
5
votes
25
replies
3.1k
views
limma models out of memory issue on Slurm HPC
Regression limma STATISITICS HPC
updated 19 months ago by 53k • written 19 months ago by ▴ 10
7
votes
6
replies
1.2k
views
Batch Effect Correction, Gene Filtering
DGE limma
updated 19 months ago by 53k • written 19 months ago by • 0
0
votes
1
reply
1.1k
views
Using splicing junction counts with edgeR/limma-voom
splicing limma edgeR
updated 19 months ago by 53k • written 19 months ago by • 0
0
votes
4
replies
1.1k
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo limma hugene11stprobeset.db AffymetrixChip
20 months ago • updated 19 months ago Efra • 0
5
votes
7
replies
1.6k
views
DEG Filtering
MicroarrayData limma Genefiltering
updated 19 months ago by 53k • written 20 months ago by • 0
2
votes
2
replies
833
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma fit design RNASeq edgeR
20 months ago Sabiha ▴ 20
0
votes
2
replies
3.0k
views
RNA sequencing raw counts gene filtering
DESeq2 limma RNAseq
20 months ago kcarey • 0
1
vote
3
replies
1.0k
views
Cross-species analysis - how to compute the mid parent value?
DESeq2 limma edgeR DifferentialExpression
written 21 months ago by • 0
2
votes
6
replies
1.6k
views
limma: vooma mean-variance trend and data filtration
MicroarrayData limma
20 months ago • updated 19 months ago Lily Cheang ▴ 10
3
votes
8
replies
1.4k
views
Constrast for Time Course Experiments using Limma
limma
20 months ago dl17032000 • 0
8
votes
6
replies
1.2k
views
DGE analysis with LIMMA
limma
updated 20 months ago by 53k • written 20 months ago by • 0
0
votes
0
replies
578
views
Can I combine collinear variables into a single value
BatchEffect limma
20 months ago Harrsha • 0
0
votes
3
replies
1.2k
views
Differential enrichment analysis
limma Differentialenrichmentanalysis DEP
updated 20 months ago by 53k • written 20 months ago by • 0
0
votes
4
replies
1.0k
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
20 months ago mperalc • 0
3
votes
5
replies
1.7k
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 20 months ago by 43k • written 20 months ago by ▴ 10
2
votes
1
reply
731
views
Limma Question
DESeq2 BatchEffect limma RNASeq
updated 20 months ago by 43k • written 20 months ago by ▴ 10
1
vote
2
replies
945
views
Bioconductor unreachable?
limma
20 months ago edoardo • 0
0
votes
9
replies
2.2k
views
limma fo continous variables
limma DEGseq
updated 20 months ago by 68k • written 20 months ago by • 0
0
votes
2
replies
808
views
limma model matrix questions
limmaGUI limma pairedsamples
20 months ago whyw6948 • 0
0
votes
2
replies
1.1k
views
Limma with replicates at different time points
RNAs limma Differen
21 months ago • updated 20 months ago alessandro • 0
2
votes
1
reply
782
views
Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 21 months ago by ★ 5.0k • written 21 months ago by • 0
1
vote
3
replies
1.5k
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 21 months ago by 53k • written 21 months ago by ▴ 10
0
votes
4
replies
1.1k
views
limma with interaction term
R biostatistics limma Epigenetics
21 months ago • updated 20 months ago Jitendra ▴ 10
3
votes
2
replies
1.0k
views
Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
21 months ago Shaimaa Gamal • 0
2
votes
3
replies
928
views
Longitudinal analysis in Limma: Block=ID as random effect
limma
21 months ago COPD_Project • 0
2
votes
2
replies
764
views
Limma design for 3 replicated time courses comparing treatment vs placebo
design limma
21 months ago SamGG ▴ 360
1
vote
4
replies
1.4k
views
limma design model for categorical variable
DNAMethylation limmaGUI biostatistics limma
updated 21 months ago by 53k • written 21 months ago by ▴ 10
4
votes
3
replies
1.1k
views
voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 21 months ago by 53k • written 21 months ago by • 0
2
votes
3
replies
1.1k
views
TMM normalization after RUVg correction
RUVSeq limma DifferentialExpression edgeR Normalization
updated 21 months ago by 68k • written 21 months ago by • 0
1
vote
2
replies
2.4k
views
How to combine a bulk and pseudobulk dataset?
DESeq2 limma RNASeq RNASeqData
written 2.5 years ago by • 0
0
votes
2
replies
722
views
Pairwise analysis of DESeq result and limma result
DESeq2 limma
21 months ago Lily Cheang ▴ 10
1
vote
2
replies
994
views
Longitudinal analysis in Limma
limma
21 months ago COPD_Project • 0
4,225 results • Page 3 of 85
Recent ...
Replies
Comment: Save the Date: BioC2026 by eja.gsssssswwse.r.m • 0
Que notícia incrivel sobre o BioC2026 Para quem gosta de aproveitar o conteudo online, também e possvel Baixar [snaptube versão antiga][1] …
Comment: Ensembl 115 has been released! by eja.gsssssswwse.r.m • 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
Awards • All
Scholar to shepherl 4.2k
Scholar to James W. MacDonald 68k
Popular Question to Daniel Cameron ▴ 40
Popular Question to Peter Hickey ▴ 760
Popular Question to edward.esiribloom • 0
Locations • All
Hong Kong, 39 minutes ago
United States, 55 minutes ago
China, 1 hour ago
Singapore, 2 hours ago
Pittsburgh, United States, 3 hours ago
Traffic: 676 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6