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Question: How to Set Up Contrasts for Case-Control Analysis in Limma While Adjusting for Covariates?
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3.6 years ago
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4.9 years ago • updated 4.8 years ago
MoltenLight
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Recent ...
Replies
Comment: upstream git branches of bioc-release
by
TrentonCollier99
•
0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
https://bioc-release.r-univ…
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
by
Ahmed Salah
•
0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR
by
JKim
•
0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Comment: upstream git branches of bioc-release
by
Jeroen
▴
10
OK I have updated https://bioc-release.r-universe.dev accordingly. Let me know if you find version differences when mirroring binaries.
Comment: Large logFC but somewhat high FDR
by
Gordon Smyth
53k
I don't know what `tp1` is. The relevant histogram would be:
```
hist(fit2$p.value[,"KO_vs_WT"])
```
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