Showing : Preprocessing • reset
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affy::rma results doesn't match with ncbi website
affy Preprocessing Microarray
updated 11 months ago by 68k • written 11 months ago by • 0
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5
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preprocessENmix colnames Error
ENmix Preprocessing
19 months ago • updated 18 months ago Eve • 0
4
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6
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1.8k
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 2.0 years ago by 53k • written 2.1 years ago by • 0
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4
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6.4k
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How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 3.3 years ago by • 0
2
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2
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1.7k
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Preprocessing Issue
sva RNASeq Preprocessing Normalization BatchEffect
updated 5.0 years ago by ★ 5.0k • written 5.0 years ago by • 0
1
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6
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3.1k
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How to process Affymetrix HT HG-U133+ PM Array Plate
affy affymetrix microarrays preprocessing
updated 7.9 years ago by ★ 4.1k • written 7.9 years ago by ▴ 260
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2
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1.8k
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AgilentG4502A_07_2 and AgilentG4502A_07_1
limma read.maimages normalization preprocessing
updated 8.2 years ago by 53k • written 8.2 years ago by • 0
0
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3
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2.2k
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Searching for packages for normalizing Metabolomic data
Preprocessing Preprocessing
updated 8.5 years ago by ▴ 10 • written 15.2 years ago by ▴ 60
0
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0
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DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV minfi preprocessing dna methylation
8.9 years ago Thomas • 0
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removing probes representing in a certain beads
minfi probe preprocessing
9.1 years ago niutster • 0
3
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9
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2.9k
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About the best use of frma for several GEO Series
frma normalization preprocessing
updated 9.2 years ago by ▴ 830 • written 9.2 years ago by ▴ 20
5
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4
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2.5k
views
meta analysis of microarrays of small sample sizes
preprocessing microarray genemeta
updated 9.4 years ago by ▴ 110 • written 9.4 years ago by ▴ 20
1
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1
reply
2.1k
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Minfi RGChannelSet preprocessing error in assayDataElement
minfi preprocessing error
updated 9.4 years ago by ★ 6.5k • written 9.4 years ago by • 0
1
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0
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2.1k
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Pre-processing of RNA sequencing data for GSVA
rnaseq rna-seq preprocessing gsva
9.5 years ago t.kuilman ▴ 170
0
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4
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2.1k
views
IONiseR readFast5Summary Error
R sequencing preprocessing bioconductor
updated 10.2 years ago by ★ 6.6k • written 10.3 years ago by • 0
5
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5
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3.3k
views
Joint Preprocessing of RNA-Seq and Microarray datasets
preprocessing rnaseq microarray
updated 10.2 years ago by 53k • written 10.2 years ago by ▴ 30
0
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1
reply
2.0k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 10.7 years ago by 68k • written 10.7 years ago by • 0
0
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0
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1.5k
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virtualArray package
Annotation Preprocessing hgu133plus2 hgug4112a
11.5 years ago Guest User ★ 13k
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1.4k
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CRISPRseek: searchHits() optimization
Preprocessing BSgenome safe BSgenome CRISPRseek Preprocessing BSgenome safe BSgenome
11.6 years ago Julie Zhu ★ 4.3k
0
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virtualArray vignette does not work: 'data' must be of a vector type, was 'NULL'
Microarray Annotation Preprocessing hgu133plus2 hgug4112a virtualArray Microarray hgug4112a
11.7 years ago Guest User ★ 13k
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GEOquery/virtualArray package error
Preprocessing hgu95av2 virtualArray Preprocessing hgu95av2 virtualArray
11.8 years ago Guest User ★ 13k
0
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1
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1.8k
views
Difference between GDS .Cel and series.matrix.txt
Normalization Preprocessing Normalization Preprocessing
updated 11.9 years ago by 21k • written 11.9 years ago by ▴ 150
0
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6
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4.5k
views
using rma() on XYS files using oligo package
Annotation Preprocessing Annotation Preprocessing
updated 12.0 years ago by ★ 4.3k • written 12.0 years ago by ▴ 30
0
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2
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2.3k
views
[MEDIPS] Error in 1:max_signal_index : argument of length 0 - what does mean?
Preprocessing Regression MEDIPS Preprocessing Regression MEDIPS
updated 12.1 years ago by ▴ 570 • written 12.1 years ago by ▴ 20
0
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1
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1.6k
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Error in virtualArray Please help
Annotation Preprocessing Annotation Preprocessing
12.2 years ago Manvendra.Singh@mdc-berlin.de ▴ 20
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0
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New method for fully scalable preprocessing of large-scale gene expression atlases (RPA)
Microarray Preprocessing Microarray Preprocessing
12.3 years ago Leo Lahti ▴ 40
0
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2.6k
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makeTranscriptDbFromGFF fails on NCBI Bacteria
Alignment Annotation Normalization GO Preprocessing Clustering Cancer Organism probe GLAD
12.5 years ago Sarah Pohl ▴ 30
0
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1
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2.6k
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Detecting differential usage of introns from RNA-seq data.
Preprocessing DEXSeq Preprocessing DEXSeq
updated 12.7 years ago by ★ 1.9k • written 12.7 years ago by ▴ 70
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virtualArray package - Error while combing data sets
Preprocessing virtualArray Preprocessing virtualArray
12.7 years ago Bade ▴ 310
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0
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3.2k
views
Filtering is not recommended with LIMMA?
Microarray Preprocessing limma Microarray Preprocessing limma
12.7 years ago Gordon Smyth 53k
0
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0
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1.5k
views
virtualArray package - Error while combing data sets
Preprocessing virtualArray Preprocessing virtualArray
12.7 years ago Bade ▴ 310
0
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0
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1.4k
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Normalizing a dataset from GEO to suit a classifier trained on another dataset
Microarray Normalization Preprocessing probe affy preprocessCore frma Microarray probe
12.9 years ago Matthew McCall ▴ 830
0
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1
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2.1k
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nsfilter error from expressionset obtained after using aroma for processing
Annotation Preprocessing hgu95av2 limma Annotation Preprocessing hgu95av2 limma
updated 12.9 years ago by ★ 13k • written 12.9 years ago by ▴ 810
0
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1
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1.7k
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Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Preprocessing BSgenome biomaRt BSgenome GenomicRanges MEDIPS Preprocessing BSgenome MEDIPS
updated 13.0 years ago by ▴ 570 • written 13.0 years ago by ▴ 290
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0
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1.6k
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Detecting significant trends in variability
Microarray Preprocessing probe minfi Microarray Preprocessing probe minfi
13.0 years ago Gustavo Fernández Bayón ▴ 440
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Sorry for cross post: Trouble creating ShortReadQ object and using writeFastq
Preprocessing ShortRead Preprocessing ShortRead
13.0 years ago Noah Dowell ▴ 410
0
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3
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3.3k
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Trouble creating a ShortReadQ object and using writeFastq
Preprocessing ShortRead Preprocessing ShortRead
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 410
0
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2
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1.5k
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Fwd: Segfault in MEDIPS MEDIPS.methylProfiling() with ROI file
Microarray Preprocessing BSgenome BSgenome MEDIPS Microarray Preprocessing BSgenome MEDIPS
updated 13.0 years ago by ▴ 290 • written 13.0 years ago by ▴ 570
0
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0
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1.5k
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importing data problem with methyAnalysis package
Biophysics Annotation Preprocessing annotate lumi methyAnalysis Biophysics Annotation lumi
13.1 years ago Pan Du ▴ 440
0
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1
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1.5k
views
Bioconductor Digest, Vol 119, Issue 1
Preprocessing Homo sapiens affy oligo RPA Preprocessing Homo sapiens affy oligo RPA
updated 13.1 years ago by ▴ 20 • written 13.1 years ago by ▴ 40
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4
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3.7k
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convert gene name to Affy ID
Preprocessing Preprocessing
updated 13.2 years ago by ▴ 10 • written 13.2 years ago by ★ 13k
0
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1
reply
1.4k
views
PVAC and Affymetrix HuGene array
Preprocessing pvac Preprocessing pvac
updated 13.3 years ago by 68k • written 13.3 years ago by ▴ 10
0
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3
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2.9k
views
Minfi preprocessing and rs probes
Preprocessing minfi Preprocessing minfi
updated 13.3 years ago by ★ 6.5k • written 13.3 years ago by ▴ 440
0
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0
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1.6k
views
segmentation fault in rma.background.correct()
GO Preprocessing AgiMicroRna GO Preprocessing AgiMicroRna
13.5 years ago Axel Klenk ★ 1.1k
0
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0
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1.4k
views
HTqPCR problems
Microarray qPCR GO Preprocessing GLAD HTqPCR Microarray qPCR GO Preprocessing GLAD
13.5 years ago cfischer ▴ 10
0
votes
1
reply
1.8k
views
PDict in GenomicRanges
Preprocessing Cancer Preprocessing Cancer
13.6 years ago Hervé Pagès 16k
0
votes
4
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2.0k
views
HTqPCR problems
qPCR GO Preprocessing GLAD HTqPCR qPCR GO Preprocessing GLAD HTqPCR
updated 13.6 years ago by ▴ 340 • written 13.7 years ago by ★ 2.0k
0
votes
1
reply
1.4k
views
oligo: ordering of \"backgroundCorrect\" and \"normalize\" output values
Normalization Preprocessing probe oligo Normalization Preprocessing probe oligo
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ★ 13k
0
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1
reply
1.2k
views
Problem in filtering of single color microarrray data using LIMMA
Microarray Preprocessing limma PROcess Microarray Preprocessing limma PROcess
updated 13.7 years ago by ▴ 130 • written 13.7 years ago by ▴ 60
0
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0
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1.6k
views
Illumina beadarray analysis with lumi
Normalization Preprocessing probe PROcess beadarray lumi Normalization Preprocessing probe
13.9 years ago Ahmet ZEHIR ▴ 50
175 results • Page 1 of 4
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Comment: Question on processing compound protein groups in limpa by JKim • 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa by Gordon Smyth 53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input by Gordon Smyth 53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2 by a2a2hset32aa • 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts by a2a2hset32aa • 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
Votes
Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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