Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
QuasR
•
reset
0
votes
7
replies
3.5k
views
'CreateProcess' failed to run error with Rbowtie
software error
quasr
rbowtie
9.5 years ago
annabel.ferguson
• 0
1
vote
1
reply
3.3k
views
ERROR: lazy loading failed for package 'QuasR'
QuasR
updated 8.1 years ago by
Martin Morgan
25k • written 8.1 years ago by
Hackerzone85
• 0
0
votes
6
replies
3.2k
views
RNA-seq analysis with R/BioC: alignment and read counts
drosophila melanogaster
quasR
genomicfeatures
genomicranges
alignment
updated 8.8 years ago by
Hervé Pagès
16k • written 8.8 years ago by
Fiona
▴ 70
0
votes
8
replies
3.2k
views
QuasR: how to use an indexed reference genome?
BSgenome
BSgenome
genomes
QuasR
BSgenome
BSgenome
genomes
QuasR
updated 11.0 years ago by
Michael Stadler
▴ 350 • written 11.0 years ago by
Paul Shannon
▴ 750
0
votes
7
replies
2.6k
views
QuasR on Linux Cluster
BSgenome
BSgenome
QuasR
BSgenome
BSgenome
QuasR
updated 10.5 years ago by
Michael Stadler
▴ 350 • written 10.5 years ago by
Ugo Borello
▴ 340
0
votes
9
replies
2.2k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
rna seq
▴ 90
2
votes
5
replies
2.1k
views
QuasR: Loading BAM files as start point
quasr
updated 8.7 years ago by
Michael Stadler
▴ 350 • written 8.7 years ago by
rahel14350
▴ 10
0
votes
7
replies
2.1k
views
QuasR: problem accessing BSgenome.Rnorvegicus.UCSC.rn5
Alignment
Rattus norvegicus
BSgenome
BSgenome
QuasR
Alignment
Rattus norvegicus
BSgenome
updated 10.2 years ago by
Hervé Pagès
16k • written 10.2 years ago by
Guido Hooiveld
★ 3.9k
1
vote
1
reply
2.0k
views
multiple threads on QuasR
Alignment
GLAD
QuasR
Alignment
GLAD
QuasR
11.0 years ago
Michael Stadler
▴ 350
0
votes
5
replies
1.8k
views
SpliceMap in QuasR package failing when sorting 25mer-alignments
rnaseq
quasr
alignment
updated 8.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.4 years ago by
nadia_boufaied
• 0
0
votes
0
replies
1.8k
views
Create a sample file /tab delimited file in QuasR
BSgenome
convert
BSgenome
genomes
QuasR
BSgenome
convert
BSgenome
genomes
QuasR
10.5 years ago
Michael Stadler
▴ 350
0
votes
2
replies
1.8k
views
quasR - how are exon identifiers for exon counts determined
rnaseq
exon
quasr
updated 9.4 years ago by
Steve Lianoglou
★ 13k • written 9.4 years ago by
sven.schuierer
• 0
0
votes
4
replies
1.7k
views
Splicemap (in QuasR) failed while aligning 25mers
QuasR
rnaseq
alignment
splicemap
bowtie2
8.1 years ago
Gabriella
• 0
0
votes
3
replies
1.6k
views
Summarization by gene or exon or transcript
QuasR
QuasR
10.5 years ago
Michael Stadler
▴ 350
0
votes
2
replies
1.6k
views
QuasR special case alignment
Alignment
genomes
QuasR
Alignment
genomes
QuasR
updated 11.0 years ago by
Ugo Borello
▴ 340 • written 11.0 years ago by
Michael Stadler
▴ 350
2
votes
4
replies
1.6k
views
Bowtie % mapped reads for DGE
Bowtie
quasr
rnaseq
updated 8.3 years ago by
Dario Strbenac
★ 1.5k • written 8.3 years ago by
tarek.mohamed
▴ 10
1
vote
6
replies
1.6k
views
Multithreading problems with qalign
quasr
parallel
updated 7.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 7.4 years ago by
kirt.onthank
• 0
1
vote
0
replies
1.6k
views
QuasR - preprocessReads fails with a SRFilterResult error
quasr
quasr error
7.2 years ago
jlncrnt
▴ 10
0
votes
2
replies
1.5k
views
QuasR question
QuasR
updated 9.7 years ago by
Daniel Soronellas
▴ 10 • written 9.7 years ago by
Michael Stadler
▴ 350
0
votes
3
replies
1.5k
views
RNAseq_alignment_SpliceMap processing time_QuasR
SpliceMap
QuasR
RNAseq
Alignment
updated 8.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.2 years ago by
tarek.mohamed
▴ 10
0
votes
1
reply
1.4k
views
QuasR: spliced and unspliced alignment
quasr
alignment
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
nadia_boufaied
• 0
0
votes
0
replies
1.4k
views
Create a sample file /tab delimited file in QuasR
BSgenome
convert
BSgenome
QuasR
BSgenome
convert
BSgenome
QuasR
10.5 years ago
Guest User
★ 13k
1
vote
2
replies
1.3k
views
Error in checkForRemoteErrors(val) : QuasR: can't pass alignment parameters
quasR
quasr error
alignmentparameters
quasr
5.4 years ago
Amer Ghalawinji
• 0
0
votes
2
replies
1.3k
views
QuasR alignment interruption
quasr
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
nadia_boufaied
• 0
0
votes
1
reply
1.3k
views
Postdoctoral research fellow
QuasR
updated 8.3 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.3 years ago by
tarek.mohamed
▴ 10
0
votes
2
replies
1.2k
views
Fusion gene mutation detection
bioconductor
quasr
7.7 years ago
maedakus
▴ 10
0
votes
0
replies
1.2k
views
QuasR for miRNA
miRNA
QuasR
miRNA
QuasR
9.9 years ago
Michael Stadler
▴ 350
0
votes
2
replies
1.2k
views
QuasR special case alignment
Alignment
QuasR
Alignment
QuasR
updated 11.0 years ago by
Michael Stadler
▴ 350 • written 11.0 years ago by
Ugo Borello
▴ 340
0
votes
1
reply
1.2k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
8.2 years ago
rna seq
▴ 90
0
votes
3
replies
1.1k
views
QuasR::qAlign: how to specify maximum allowed number of mismatches and output all alignments
QuasR
updated 4.4 years ago by
Michael Stadler
▴ 350 • written 4.4 years ago by
Julie Zhu
★ 4.3k
0
votes
1
reply
1.1k
views
QuasR - importing alignment files from other aligners
quasr
updated 9.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 9.4 years ago by
sven.schuierer
• 0
1
vote
4
replies
1.1k
views
qQCReport Missing Plots Described in Documentation
QuasR
updated 5.1 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 5.2 years ago by
Dario Strbenac
★ 1.5k
0
votes
1
reply
1.1k
views
Memory error building index
QuasR
updated 9.5 years ago by
Martin Morgan
25k • written 9.5 years ago by
hmabril
• 0
0
votes
0
replies
1.1k
views
Error in qAlign, QuasR, in paired-end RNA Seq
quasr
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
1
reply
1.1k
views
qCount with a GRangesList is very slow
QuasR
qCount
GRangesList
6.8 years ago
vakul.mohanty
▴ 10
1
vote
1
reply
1.0k
views
QuasR error message
QuasR
RNA_Seq
updated 6.4 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 6.4 years ago by
ta_awwad
▴ 10
0
votes
1
reply
1.0k
views
Error when running qAlign from QuasR package for sequence alignment & QC.
QualityControl
Alignment
QuasR
updated 3.2 years ago by
Michael Stadler
▴ 350 • written 3.2 years ago by
h.kozlowski
• 0
0
votes
0
replies
941
views
Error preprocessReads : Error in writeFastq
quasr
rnaseq
paired-end reads
7.3 years ago
guillaume.dachy
• 0
0
votes
0
replies
935
views
RNA Seq // QuasR : Error while extracting unmapped reads
quasr
quasr error
paired-end reads
rnaseq
7.3 years ago
guillaume.dachy
• 0
0
votes
0
replies
868
views
can not depends QuasR in another package
QuasR
6.8 years ago
zwfanwz678
• 0
2
votes
1
reply
844
views
preprocessReads: Can't remove more than 17 nucleotides
QuasR
preprocessReads
updated 2.5 years ago by
James W. MacDonald
65k • written 2.5 years ago by
sha-ked
• 0
0
votes
1
reply
774
views
RNAseq analysis of organism not included in BSgenome using QuasR
QuasR
updated 3.5 years ago by
Michael Stadler
▴ 350 • written 3.5 years ago by
anuranjansrathore
• 0
0
votes
1
reply
766
views
using qCount from the QuasR package
qCount
QuasR
NA
updated 3.7 years ago by
Michael Stadler
▴ 350 • written 3.8 years ago by
jabbar_campbell
• 0
43 results • Page
1 of 1
Recent ...
Replies
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Votes
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Awards
• All
Scholar
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Scholar
to
Michael Love
41k
Supporter
to
JKim
• 0
Popular Question
to
Gordon Smyth
50k
Locations
• All
France,
2 minutes ago
Belgium,
2 minutes ago
United Kingdom,
4 minutes ago
Ireland,
9 minutes ago
United States,
10 minutes ago
Traffic: 1020 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6