Showing : SNP • reset
6
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11
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1.8k
views
"associated_gene" attribute from biomaRt returns too few values - SNP(rsID dataset)
r biomart SNP annotation HUGO
updated 3.7 years ago by ★ 6.5k • written 3.7 years ago by • 0
5
votes
4
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9.7k
views
Getting rs ids using chr coordinates | Biomart
SNP rs id Biomart Chromosome coordinates
updated 9 months ago by 65k • written 3.7 years ago by • 0
5
votes
9
replies
4.2k
views
Looking for annotation file for Affymetrix SNP 6.0
copynumber snp affymetrix
8.4 years ago KB ▴ 50
5
votes
5
replies
4.2k
views
SNP Function Information from biomaRt
biomart snp nonsynonymous
updated 9.6 years ago by 21k • written 9.6 years ago by ▴ 10
3
votes
4
replies
1.5k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
7.2 years ago Ramiro Magno ▴ 100
3
votes
5
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1.6k
views
Understanding PureCN and its germline SNPs
PureCN germline SNP
updated 5.9 years ago by • 0 • written 6.1 years ago by ▴ 10
3
votes
3
replies
1.9k
views
Retrieve SNP flanking sequences in biomaRt
biomart snp upstream_flank downstream_flank
updated 7.5 years ago by ★ 6.5k • written 7.5 years ago by ▴ 20
2
votes
1
reply
2.1k
views
overlap GRangesList and vcf
SNP SNP
updated 11.7 years ago by ★ 6.8k • written 11.7 years ago by ▴ 120
2
votes
2
replies
2.1k
views
Converting single GRanges object as per chromosome GRangeList
SNP GO convert SNP GO convert
updated 10.4 years ago by ★ 13k • written 10.4 years ago by ▴ 260
2
votes
1
reply
1.3k
views
GenomicAlignments/access correct bp positions near indels
genomicranges genomicalignments snp
updated 7.0 years ago by 16k • written 7.0 years ago by ▴ 90
2
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3
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2.4k
views
ggbio circular plot
ggbio SNP granges
updated 8.4 years ago by ★ 11k • written 8.4 years ago by • 0
2
votes
2
replies
2.5k
views
How to convert 1000 genomes VCF files to the format of traditional SNP array format?
SNP 1000genome
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 20
1
vote
2
replies
2.1k
views
DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
updated 8.6 years ago by ▴ 20 • written 8.6 years ago by • 0
1
vote
2
replies
1.3k
views
TCGA MAF (Mutations) data
TCGA MAF GDC snp mutations
updated 5.0 years ago by 21k • written 5.0 years ago by ▴ 160
1
vote
6
replies
2.3k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
9.4 years ago garrisrg ▴ 10
1
vote
2
replies
3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment SNP dnasequence
7.2 years ago lordbleys • 0
1
vote
3
replies
1.3k
views
VariantAnnotation package with snp location
SNP VariantAnnotation VariantAnnotation SNP VariantAnnotation VariantAnnotation
updated 11.2 years ago by ★ 4.2k • written 11.2 years ago by ▴ 970
1
vote
0
replies
2.1k
views
Job: Bioinformatics Scientist @ Berlin Institute for Medical Systems Biology
rnaseq snp chipseq Job
7.9 years ago altuna akalin ▴ 20
1
vote
0
replies
1.1k
views
biomart Ensembl Regulatory Build
SNP Transcription biomaRt SNP Transcription biomaRt
13.0 years ago Fabrice Tourre ▴ 970
1
vote
0
replies
946
views
SIM new package for Statistical Integration of Microarrays
SNP Microarray Visualization Cancer SNP Microarray Visualization Cancer
15.6 years ago Maarten van Iterson ▴ 60
1
vote
2
replies
1.7k
views
biomaRt error message
biomaRt snp
updated 9.5 years ago by ▴ 800 • written 9.5 years ago by ▴ 10
0
votes
3
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1.4k
views
GWATools use in creating ncdf files
SNP cdf GWASTools SNP cdf GWASTools
updated 10.9 years ago by ▴ 60 • written 10.9 years ago by ▴ 870
0
votes
5
replies
1.6k
views
Visualization of alignments with mismatch bases
SNP Coverage Alignment Visualization ggbio SNP Coverage Alignment Visualization ggbio
updated 11.2 years ago by ▴ 420 • written 11.2 years ago by ★ 11k
0
votes
1
reply
1.7k
views
getBM function in biomaRt
SNP GO hgu133a SNP GO hgu133a
updated 14.4 years ago by ▴ 600 • written 14.4 years ago by ★ 1.1k
0
votes
0
replies
615
views
Reading Affy Snp Chips. Probe level problem.
SNP probe affy SNP probe affy
19.7 years ago Raoul-Sam Daruwala ▴ 30
0
votes
1
reply
821
views
probe length was:RE: GCRMA backgrounds?
SNP Cancer affy gcrma SNP Cancer affy gcrma
updated 19.8 years ago by ▴ 810 • written 19.8 years ago by ▴ 80
0
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0
replies
930
views
Software and references for SNP chip data analysis
SNP SNP
19.6 years ago Caimiao Wei ▴ 100
0
votes
4
replies
1.1k
views
how to read in affy snp 500K arrays
SNP affy SNP affy
updated 16.5 years ago by ★ 4.3k • written 16.5 years ago by ▴ 640
0
votes
0
replies
977
views
SNP analysis
SNP affy SNP affy
19.5 years ago Ulrich Pfeffer ▴ 50
0
votes
1
reply
765
views
affy SNP chips
SNP SNP
updated 19.1 years ago by 65k • written 19.1 years ago by ★ 1.4k
0
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2
replies
1.7k
views
find gene symbols immediately flanking before and after a SNP position
SNP SNP
updated 11.2 years ago by ★ 6.8k • written 11.2 years ago by ▴ 220
0
votes
1
reply
967
views
probe length was:RE: GCRMA backgrounds?
SNP probe affy gcrma SNP probe affy gcrma
19.8 years ago Paul Boutros ▴ 340
0
votes
4
replies
1.2k
views
GCRMA backgrounds?
SNP affy gcrma SNP affy gcrma
updated 19.8 years ago by ▴ 940 • written 19.8 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Convert Affy SNP array 0, 1, 2 to A C G T
SNP affy convert SNP affy convert
11.5 years ago Fabrice Tourre ▴ 970
0
votes
0
replies
1.1k
views
qPCR 2009 Event Agenda Online
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
4
replies
1.1k
views
Communicating gene-probe relationships to sam
SNP Biobase siggenes SNP Biobase siggenes
18.0 years ago Charles Crane ▴ 30
0
votes
1
reply
779
views
Tools to process Affymetrix tiling arrays/SNPchips
SNP SNP
updated 19.9 years ago by 65k • written 19.9 years ago by ▴ 50
0
votes
2
replies
856
views
Affy SNP chips.
SNP probe affy SNP probe affy
updated 19.7 years ago by ▴ 320 • written 19.7 years ago by ▴ 30
0
votes
1
reply
1.6k
views
DNAcopy for CNV in SNP Affy 6.0
SNP affy DNAcopy SNP affy DNAcopy
12.1 years ago Ekta Jain ▴ 370
0
votes
0
replies
1.1k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
17.8 years ago Todd Nick ▴ 10
0
votes
0
replies
1.7k
views
Ph.D / Postdoctoral Position in Bioinformatics at Johannes Kepler University Linz, Austria
SNP Microarray Biophysics Classification SNP Microarray Biophysics Classification
18.0 years ago Birgit Hauer ▴ 30
0
votes
1
reply
800
views
SNP chips
SNP cdf affy SNP cdf affy
updated 20.7 years ago by 65k • written 20.7 years ago by ▴ 50
0
votes
1
reply
893
views
tiling/SNP microarrays
SNP Coverage tilingArray SNP Coverage tilingArray
updated 17.8 years ago by 21k • written 17.8 years ago by ▴ 10
0
votes
10
replies
1.5k
views
Affymetrix 500k SNP chips -- copy number/LOH/deletions
SNP SNP
17.7 years ago Stephen Henderson ★ 1.0k
0
votes
0
replies
729
views
Cancer genome project SNP data
SNP Cancer SNP Cancer
17.7 years ago Daniel Brewer ★ 1.9k
0
votes
2
replies
1.2k
views
genotyping RLMM probe level model?
SNP probe RLMM SNP probe RLMM
updated 17.6 years ago by ★ 4.3k • written 17.6 years ago by ▴ 170
0
votes
2
replies
887
views
cdfenv files ATTN: James McDonald
SNP cdf probe reposTools affy SNP cdf probe reposTools affy
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 20
0
votes
3
replies
1.2k
views
Spatial Correction
SNP Normalization affy oligo SNP Normalization affy oligo
updated 17.6 years ago by ▴ 120 • written 17.6 years ago by ▴ 170
0
votes
1
reply
1.3k
views
[Bioc-devel] SNPscan -> SNPchip
SNP Annotation Yeast Biobase SNPchip SNP Annotation Yeast Biobase SNPchip
updated 17.5 years ago by ▴ 250 • written 17.5 years ago by ▴ 170
0
votes
3
replies
1.2k
views
[JOB] Bioinformatics positions at NCI
SNP Cancer CGH affy SNP Cancer CGH affy
updated 18.0 years ago by ▴ 190 • written 18.0 years ago by 21k
50 results • Page 1 of 1
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Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
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Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
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I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
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It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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