Showing : STRINGdb • reset
4
votes
9
replies
912
views
Get_interactions is giving the combined score
STRINGdb
updated 3 months ago by • 0 • written 3 months ago by ▴ 20
0
votes
3
replies
388
views
STRINGdb server response time for mapping
mapping serverresponsetime STRINGdb
updated 5 months ago by ▴ 110 • written 5 months ago by • 0
1
vote
3
replies
439
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 5 months ago by ▴ 110 • written 5 months ago by • 0
0
votes
3
replies
518
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 5 months ago by ▴ 110 • written 5 months ago by • 0
0
votes
6
replies
1.5k
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 7 months ago by • 0 • written 8 months ago by • 0
0
votes
2
replies
657
views
StringDB: Cannot use payload mechanism to colour nodes
RNASeqData STRINGdb DifferentialExpression GraphAndNetwork Network
10 months ago Luca • 0
2
votes
5
replies
1.9k
views
STRINGdb R package reference class instantiation with v12.0
STRINGdb
updated 7 months ago by ▴ 110 • written 11 months ago by • 0
0
votes
1
reply
478
views
Specifying evidence channels in STRINGdb
STRINGdb stringdb
13 months ago robynne.braun • 0
0
votes
7
replies
1.6k
views
Cannot open URL for StringDB protein.links.v11.5/9606.protein.links.v11.5.txt.gz
STRINGdb
updated 14 months ago by ▴ 110 • written 15 months ago by • 0
0
votes
0
replies
761
views
Issues setting background in STRINGdb
STRINGdb MSstats
17 months ago samsiljee • 0
2
votes
2
replies
1.5k
views
STRINGdb offline use (via input_directory argument)
STRINGdb
20 months ago Charlotte Soneson ▴ 170
2
votes
3
replies
1.1k
views
Potential bug in STRINGdb$get_aliases()
STRINGdb
2.5 years ago AstrobioMike • 0
1
vote
2
replies
1.3k
views
Filter proteins with known interactions from STRINGdb R package
STRINGdb
2.6 years ago Abhishek • 0
2
votes
4
replies
2.2k
views
STRINGdb string_db$map error
STRINGdb HELP
updated 21 months ago by ▴ 10 • written 2.7 years ago by ▴ 10
0
votes
6
replies
2.5k
views
STRINGdb : error with string_db$plot_network()
STRINGdb
2.8 years ago • updated 2.7 years ago Wolfgang RAFFELSBERGER ▴ 140
2
votes
9
replies
2.5k
views
STRINGdb images very low quality?
STRINGdb
updated 2.8 years ago by ▴ 110 • written 2.9 years ago by ▴ 30
3
votes
4
replies
2.7k
views
STRINGdb: Error in download.file(urlStr, temp)
STRINGdb R
updated 2.8 years ago by ▴ 110 • written 3.0 years ago by ▴ 10
0
votes
3
replies
1.6k
views
STRINGdb : accessing all types of (sub-)scores from interactions
STRINGdb
updated 3.2 years ago by ▴ 110 • written 3.2 years ago by ▴ 140
0
votes
1
reply
958
views
Error in mapping the gene names to the STRINGdb identifiers
PPI STRINGdb
updated 3.2 years ago by ▴ 110 • written 3.2 years ago by ▴ 10
0
votes
0
replies
1.0k
views
R: STRINGdb, from get_enrichment() function how to get background gene list that are related to pathways?
R STRINGdb
3.4 years ago choijamts • 0
0
votes
1
reply
2.0k
views
Network analysis: Is low confidence score valid (STRING DB)
STRINGdb Network
updated 3.4 years ago by ★ 4.0k • written 3.4 years ago by • 0
1
vote
1
reply
1.1k
views
How to find the source code of the package STRINGdb ?
STRINGdb Bioconductor
updated 3.7 years ago by 4.1k • written 3.7 years ago by ▴ 10
0
votes
1
reply
946
views
How can I download all supported species information table of STRINGdb V11
STRINGdb STRING
updated 4.0 years ago by 6.7k • written 4.0 years ago by • 0
0
votes
15
replies
3.0k
views
Is the STRINGdb server down?
STRINGdb R protein
updated 5.4 years ago by • 0 • written 5.6 years ago by • 0
2
votes
4
replies
1.8k
views
Can't create STRINGdb v11 object using STRINGdb packages methods
stringdb
5.4 years ago Moosa • 0
0
votes
2
replies
1.5k
views
STRING_id mismatch with STRINGdb
STRINGdb igraph
5.6 years ago Samuel Lee • 0
0
votes
1
reply
1.2k
views
STRINGdb: enrichment function raises error
STRINGdb stringdb gene set enrichment analysis software error go
5.9 years ago wsciekly.maciek ▴ 10
0
votes
1
reply
983
views
error with STRINGdb package to download the graph
stringdb R
6.4 years ago Salvo88 ▴ 20
0
votes
1
reply
1.2k
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi stringdb mus musculus
updated 6.6 years ago by ▴ 110 • written 6.6 years ago by ▴ 20
0
votes
4
replies
1.5k
views
problem with get_link function
STRINGdb get_link bug
6.8 years ago cristinapasi • 0
0
votes
0
replies
1.1k
views
Problem with link generated with R using the string_db$get_link
stringdb
7.5 years ago Ilario De Toma ▴ 10
0
votes
3
replies
2.7k
views
unable to connect to 'string.uzh.ch' on port 80
STRINGdb vignette
updated 7.5 years ago by ▴ 10 • written 7.5 years ago by • 0
1
vote
2
replies
1.5k
views
string-db.org link not working in generated graphic
STRINGdb
7.9 years ago • updated 7.8 years ago florian.reisinger • 0
0
votes
1
reply
1.6k
views
Plotting protein-protein interaction enrichment with STRINGdb
stringdb error
8.1 years ago Lluís Revilla Sancho ▴ 760
1
vote
2
replies
2.0k
views
How to export a STRINGDB network to XML
STRINGdb
updated 9.5 years ago by ▴ 10 • written 9.5 years ago by ▴ 160
35 results • Page 1 of 1
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`nec` computes one set of negative control parameters (mu, sigma, alpha) for each sample.
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Thank you to the author for the quick reply. If I use `gene_counts_length_scaled.tsv` as a metric that has already normalized for library s…
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Given nf-core's pipeline here, you can use rounded counts from `gene_counts_length_scaled.tsv`.
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You don't want to add a logFC on top like that, as it invalidates the p-value. Maybe I wasn't clear before. The LRT gives you all the gene…
Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0
Hi James, Thank you very much for your very detailed explanation! I guess my question is simpler than that, I just want to union, across…
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