Bioconductor Shiny

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6.9k

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shiny package deploy

7.7 years ago lloyd.izard ▴ 80

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annotation genomicranges visualization docker shiny Tutorial

9.8 years ago Vincent J. Carey, Jr. 6.7k

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iSEE shiny summarizedExperiment News

6.7 years ago Aaron Lun ★ 29k

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SC3 single-cell shiny

updated 8.6 years ago by Vladimir Kiselev ▴ 150 • written 8.6 years ago by cfustero ▴ 20

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shiny network interactions

11.1 years ago pshannon ▴ 100

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cellcode shiny heatmap

updated 9.6 years ago by Andrzej Oleś ▴ 750 • written 9.6 years ago by christopher.clarskon15 ▴ 20

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shiny

updated 9.1 years ago by Martin Morgan 25k • written 9.1 years ago by bhakti.dwivedi • 0

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ChAMP Epigenetics plotly Shiny GUI News

9.1 years ago • updated 8.9 years ago Yuan Tian ▴ 90

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limmagui shiny

9.7 years ago christopher.clarskon15 ▴ 20

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rtracklayer browsegenome shiny

updated 7.2 years ago by Michael Lawrence ★ 11k • written 7.2 years ago by vivek82 • 0

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DEBrowser shiny

6.9 years ago tomasfly • 0

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deseq2 shiny design rhandsontable hot_to_r()

updated 6.8 years ago by Michael Love 43k • written 6.8 years ago by hinkel2 • 0

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R validate shiny

10.2 years ago alptaciroglu ▴ 50

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1.4k

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AnnotationHub Shiny Rstudio

updated 5.8 years ago by shepherl 4.2k • written 5.8 years ago by bwiley4 • 0

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BatchQC RNA-seq R Shiny batch-effect

5.7 years ago manninm • 0

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965

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shiny EBImage

3.4 years ago Wolfgang Huber ★ 13k

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ChAMP shiny ChAMPdata

updated 3.8 years ago by anna.stanislawska • 0 • written 3.8 years ago by Mari • 0

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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