Bioconductor Splicing

Showing : Splicing • reset

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371

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splicing 5utr ORFik

updated 4 weeks ago by Kevin Blighe ★ 4.0k • written 5 months ago by luna.picello • 0

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1.1k

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splicing limma edgeR

updated 21 months ago by Gordon Smyth 53k • written 21 months ago by scoops_streams_06 • 0

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929

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transcriptome splicing assembly

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Marianna ▴ 20

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1.5k

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splicing Exon featureCounts subread DEXSeq

3.6 years ago NIK • 0

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1.2k

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

5.2 years ago noahhelton98 ▴ 20

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3.7k

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edger normalization differential exon usage splicing

updated 5.2 years ago by Yunshun Chen ▴ 900 • written 5.2 years ago by oakhamwolf • 0

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1.7k

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DEXSeq Splicing Exon Usage

5.9 years ago gunjan.dikshit • 0

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1.5k

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ciri splicing splicesites

updated 5.9 years ago by lhddiallo • 0 • written 7.6 years ago by csijst • 0

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1.4k

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junctionseq splicing RNAseq DEXSeq

written 6.1 years ago by stuart ▴ 10

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2.1k

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genomicalignments splicing coverage

updated 6.2 years ago by Michael Lawrence ★ 11k • written 8.7 years ago by rasi1983 ▴ 10

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1.3k

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dexseq splicing sqtl qtl

updated 6.9 years ago by Alejandro Reyes ★ 1.9k • written 6.9 years ago by rtunney2 • 0

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2.4k

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deseq2 splicing

updated 7.6 years ago by Michael Love 43k • written 7.6 years ago by yannickwurm • 0

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2.1k

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DRIMSeq splicing differential isoform usage

updated 8.9 years ago by Gosia Nowicka ▴ 90 • written 8.9 years ago by kristoffer.vittingseerup ▴ 20

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3.7k

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sgseq splicing alternative splicing

updated 9.8 years ago by Leonard Goldstein ▴ 260 • written 9.8 years ago by vakul.mohanty ▴ 20

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2.2k

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microarray splicing

updated 9.9 years ago by Sonika Tyagi ▴ 20 • written 11.2 years ago by gv ▴ 40

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1.9k

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DEXSeq splicing python SAM

10.2 years ago Fiona ▴ 70

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2.9k

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SGSeq analyzeFeatures Splicing

11.0 years ago Paolo Guarnieri ▴ 20

17 results • Page 1 of 1

Recent ...

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Comment: segfault in edgeR glmQLFit by Mark • 0

Thanks! We had been considering some of these adjustments as well, given the small number of features and total reads. Your advice is well-…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by ATpoint ★ 5.0k

> and I first used the normalized counts You would not use these normalized counts for PCA as they're not on log2 scale. As such, the feat…

Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0

Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…

Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0

In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…

Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0

Sounds good. @[time][1] [1]: https://timeduration.github.io

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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