Bioconductor Splicing

Showing : Splicing • reset

votes

622

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splicing limma edgeR

updated 9 months ago by Gordon Smyth 52k • written 9 months ago by scoops_streams_06 • 0

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699

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transcriptome splicing assembly

updated 2.1 years ago by James W. MacDonald 67k • written 2.1 years ago by Marianna ▴ 20

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1.1k

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splicing Exon featureCounts subread DEXSeq

2.6 years ago NIK • 0

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869

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

4.2 years ago noahhelton98 ▴ 20

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2.9k

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edger normalization differential exon usage splicing

updated 4.2 years ago by Yunshun Chen ▴ 900 • written 4.2 years ago by oakhamwolf • 0

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1.4k

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DEXSeq Splicing Exon Usage

4.9 years ago gunjan.dikshit • 0

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1.3k

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ciri splicing splicesites

updated 4.9 years ago by lhddiallo • 0 • written 6.6 years ago by csijst • 0

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1.0k

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junctionseq splicing RNAseq DEXSeq

5.1 years ago stuart ▴ 10

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1.7k

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genomicalignments splicing coverage

updated 5.2 years ago by Michael Lawrence ★ 11k • written 7.7 years ago by rasi1983 ▴ 10

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1.1k

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dexseq splicing sqtl qtl

updated 5.9 years ago by Alejandro Reyes ★ 1.9k • written 5.9 years ago by rtunney2 • 0

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2.0k

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deseq2 splicing

updated 6.6 years ago by Michael Love 43k • written 6.6 years ago by yannickwurm • 0

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1.7k

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DRIMSeq splicing differential isoform usage

updated 7.9 years ago by Gosia Nowicka ▴ 90 • written 7.9 years ago by kristoffer.vittingseerup ▴ 20

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3.1k

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sgseq splicing alternative splicing

updated 8.8 years ago by Leonard Goldstein ▴ 260 • written 8.8 years ago by vakul.mohanty ▴ 20

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1.9k

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microarray splicing

updated 8.9 years ago by Sonika Tyagi ▴ 20 • written 10.2 years ago by gv ▴ 40

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1.6k

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DEXSeq splicing python SAM

9.2 years ago Fiona ▴ 70

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2.4k

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SGSeq analyzeFeatures Splicing

10.0 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Answer: EuroBioC2023 abstract submission closing soon! by excess.gecko.shso • 0

Don't miss out! EuroBioC2023 abstract submissions are nearing the deadline. Sharpen your scientific [Wordle Game][1] skills and submit your…

Answer: EuroBioC2024 abstract submission is open! by excess.gecko.shso • 0

EuroBioC2024 abstract submissions are now open! Join the Oxford conference from Sep 4-6. Submit your abstract by April 26 for short talks, …

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Votes

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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