Showing : affylmGUI • reset
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Cutoff to use for IQR filtering in genefilter
affylmGUI affylmGUI
updated 15.9 years ago by ▴ 400 • written 15.9 years ago by ▴ 80
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2.7k
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[Bioc-devel] Tcl/TK pckage "Bwidget"
affylmGUI limmaGUI affylmGUI limmaGUI
17.0 years ago Keith Satterley ▴ 450
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4
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2.4k
views
tcltk package for R 2.14.1
affylmGUI BiocInstaller affylmGUI BiocInstaller
updated 12.3 years ago by ★ 8.2k • written 12.3 years ago by ▴ 70
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18
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2.3k
views
LPE error caused by gcRMA [Error in var.M.adap[i] <- ifelse(!is.na(var.M.adap[i - 1]), mean(var.M.adap[i + : replacement has length zero]
Cancer gcrma LPE affylmGUI Cancer gcrma LPE affylmGUI
updated 15.5 years ago by ▴ 70 • written 15.5 years ago by ★ 13k
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6
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2.2k
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Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.7 years ago by ▴ 10 • written 15.8 years ago by ▴ 50
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2
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2.2k
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How to convert probe sets to Gene symbols ?
affylmgui affymetrix microarrays hgu133plus2
updated 8.4 years ago by ▴ 360 • written 8.4 years ago by • 0
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8
replies
1.9k
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oneChannelGUI
Rgraphviz affylmGUI oneChannelGUI Rgraphviz affylmGUI oneChannelGUI
updated 13.5 years ago by ▴ 500 • written 13.5 years ago by ▴ 200
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2
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1.8k
views
Tktable 2.9 makefile problem
GO affylmGUI GO affylmGUI
updated 12.1 years ago by 25k • written 12.1 years ago by ▴ 10
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7
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1.7k
views
Missing GeneSymbol and Name information in TopTable
Annotation hgu133plus2 annaffy affylmGUI Annotation hgu133plus2 annaffy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 40
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8
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1.7k
views
affylmGUI/biocReposList() Problem
affylmGUI affylmGUI
updated 11.8 years ago by 65k • written 11.8 years ago by ▴ 30
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4
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1.5k
views
tkrplot in R2.0 on Mac OS X
affylmGUI affylmGUI
updated 19.5 years ago by ▴ 1000 • written 19.5 years ago by ▴ 100
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0
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1.5k
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Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
15.9 years ago Mark Cowley ▴ 400
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8
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1.5k
views
affylmGUI segfault on "pd.ragene.1.0.st.v1"
Normalization GO cdf affy affylmGUI Normalization GO cdf affy affylmGUI
updated 15.3 years ago by ★ 13k • written 15.3 years ago by ▴ 70
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5
replies
1.5k
views
Problem with Installing affylmGUI on MAC OS X
Cancer affylmGUI Cancer affylmGUI
18.8 years ago Richard Friedman ★ 2.0k
0
votes
4
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1.4k
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Regarding CDF file
cdf affylmGUI cdf affylmGUI
updated 10.9 years ago by 65k • written 10.9 years ago by ▴ 170
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votes
2
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1.4k
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
affylmGUI limmaGUI affylmGUI limmaGUI
updated 15.8 years ago by ▴ 90 • written 15.8 years ago by ▴ 140
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3
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1.4k
views
affylmGUI affy affymetrix
affylmgui
updated 8.4 years ago by 50k • written 8.4 years ago by • 0
0
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3
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1.3k
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limma gene symbol not avialable problem
cdf affy affydata limma affylmGUI affyio cdf affy affydata limma affylmGUI affyio
updated 16.9 years ago by 65k • written 16.9 years ago by ▴ 450
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4
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1.3k
views
Exon Array analysis
cdf affylmGUI cdf affylmGUI
updated 15.1 years ago by ▴ 500 • written 15.1 years ago by ▴ 10
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2
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1.2k
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Bioconductor does not provide Humane gene ST annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
updated 14.6 years ago by ★ 7.2k • written 14.6 years ago by ▴ 10
1
vote
6
replies
1.2k
views
Error while running affylmGUI
microarray limma affy affylmGUI
updated 5.2 years ago by 50k • written 5.2 years ago by • 0
0
votes
1
reply
1.2k
views
Regarding CDF & annotation package
Microarray Annotation affylmGUI Microarray Annotation affylmGUI
updated 11.5 years ago by ★ 3.9k • written 11.5 years ago by ▴ 10
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5
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1.2k
views
CDF/Probe/Annotation for GNF1m custom chip
cdf probe affylmGUI cdf probe affylmGUI
updated 17.1 years ago by ★ 6.5k • written 17.1 years ago by ▴ 830
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3
replies
1.2k
views
Defining and handling replicates
GO affy limma affylmGUI GO affy limma affylmGUI
updated 18.9 years ago by 50k • written 18.9 years ago by ▴ 70
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1
reply
1.2k
views
(microarray) - affylmGUI error when reading Affymetrix U133A and U133B .CEL file
Microarray PROcess affylmGUI Microarray PROcess affylmGUI
updated 11.6 years ago by 65k • written 11.6 years ago by ▴ 30
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3
replies
1.2k
views
Error in parse() loading affylmGUI
affylmGUI affylmGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 340
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votes
1
reply
1.1k
views
An error of affylmGUI
cdf affy affylmGUI affyio cdf affy affylmGUI affyio
updated 16.7 years ago by ▴ 450 • written 16.7 years ago by ▴ 450
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2
replies
1.1k
views
affylmGUI annotations
Annotation annotate affylmGUI Annotation annotate affylmGUI
updated 12.7 years ago by ★ 2.0k • written 12.7 years ago by ▴ 30
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votes
3
replies
1.1k
views
R crashes after image array plots hgu133plus2 in R2.6.0
GUI hgu133plus2 affy limma affylmGUI GUI hgu133plus2 affy limma affylmGUI
updated 16.5 years ago by 25k • written 16.5 years ago by ★ 2.0k
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0
replies
1.1k
views
BioC GUI development
Microarray Genetics GUI affy limma affylmGUI limmaGUI Microarray Genetics GUI affy
20.4 years ago James Wettenhall ▴ 1000
0
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0
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1.1k
views
Bioconductor does not provide Humane gene ST, annotation "hugene10stv1cdf" to work with affylmGUI?!
Annotation cdf affylmGUI Annotation cdf affylmGUI
14.6 years ago rcaloger ▴ 500
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0
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1.1k
views
TopTable function in affylmGUI does not have Gene names
affylmGUI affylmGUI
12.4 years ago Guest User ★ 13k
0
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1
reply
1.1k
views
Re: Limma GUI exporting
Microarray limma affylmGUI limmaGUI Microarray limma affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
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0
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1.0k
views
Re: affylmGUI
Genetics affylmGUI limmaGUI convert Genetics affylmGUI limmaGUI convert
19.9 years ago James Wettenhall ▴ 1000
0
votes
1
reply
1.0k
views
loading CEL files in affylmGUI
Annotation affylmGUI Annotation affylmGUI
updated 19.9 years ago by ▴ 1000 • written 19.9 years ago by ▴ 60
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votes
3
replies
1.0k
views
Using CDF file on affylmGUI
Proteomics GO affylmGUI Proteomics GO affylmGUI
updated 17.5 years ago by ▴ 450 • written 17.5 years ago by ▴ 70
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0
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1.0k
views
Issues running affylmGUI
Cancer Breast affylmGUI Cancer Breast affylmGUI
13.4 years ago Lorenzo Melchor ▴ 50
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votes
2
replies
1.0k
views
R scripts from AffylmGUI
Microarray affylmGUI Microarray affylmGUI
updated 14.8 years ago by ▴ 450 • written 14.8 years ago by ▴ 200
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0
replies
1.0k
views
problems with oneChannelGUI
affylmGUI oneChannelGUI ASSIGN affylmGUI oneChannelGUI ASSIGN
12.1 years ago Manuela Di Russo ▴ 70
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0
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1.0k
views
Question (vennDiagram vs. topTable) + Patch (plotTitle for vennDiagram) for AffylmGUI 1.3.0
affylmGUI affylmGUI
18.9 years ago Steffen Moeller ▴ 40
0
votes
1
reply
997
views
Difficulty installing oneChannelGUI in Vista
Cancer affylmGUI oneChannelGUI Cancer affylmGUI oneChannelGUI
updated 13.9 years ago by 65k • written 13.9 years ago by ★ 2.0k
0
votes
0
replies
996
views
limma citations [was LimmaGUI for illumina data]
Annotation GUI Kidney limma affylmGUI limmaGUI Annotation GUI Kidney limma affylmGUI
17.9 years ago Gordon Smyth 50k
0
votes
0
replies
987
views
LimmaGUI for illumina data
GUI affy limma affylmGUI limmaGUI beadarray GUI affy limma affylmGUI limmaGUI beadarray
17.9 years ago Mark Dunning ▴ 320
0
votes
1
reply
977
views
AffylmGUI freezes with recent updates of Windows 7 Enterprise Service Pack 1
Cancer affylmGUI Cancer affylmGUI
updated 11.3 years ago by ▴ 450 • written 11.3 years ago by ★ 2.0k
0
votes
1
reply
953
views
how to import mas5 data into expresso (affy package)
Microarray limma PROcess affylmGUI Microarray limma PROcess affylmGUI
updated 15.9 years ago by 65k • written 15.9 years ago by ▴ 80
0
votes
0
replies
945
views
Different result from gcrma function by using command line gcrma, affylmGUI and oneChannelGUI.
gcrma affylmGUI oneChannelGUI gcrma affylmGUI oneChannelGUI
13.7 years ago Lin Ying ▴ 10
0
votes
0
replies
933
views
Request for users of limmaGUI, affylmGUI, JSM2005 or IBC2004 microarray course websites or my R-Tcl/Tk examples
affylmGUI limmaGUI affylmGUI limmaGUI
18.3 years ago James Wettenhall ▴ 1000
0
votes
0
replies
927
views
Is anyone developing an extensible Galaxy-like interface for Bioconductor?
Cancer affylmGUI limmaGUI Cancer affylmGUI limmaGUI
15.8 years ago Martin Morgan 25k
0
votes
1
reply
926
views
Affy huGENE ST arrays
cdf affy affylmGUI cdf affy affylmGUI
updated 14.7 years ago by ★ 7.2k • written 14.7 years ago by ▴ 10
0
votes
0
replies
915
views
limmaGUI & affylmGUI wizards for Windows & bug fixes
Microarray Genetics cdf affylmGUI limmaGUI Microarray Genetics cdf affylmGUI limmaGUI
19.9 years ago James Wettenhall ▴ 1000
50 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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