Showing : arrayqualitymetrics • reset
10
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arrayQualityMetrics does not complete successfully
arrayqualitymetrics
updated 7.5 years ago by ▴ 10 • written 8.2 years ago by ▴ 10
6
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11
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3.7k
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arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.9 years ago by ▴ 40 • written 9.4 years ago by ▴ 200
4
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6
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4.5k
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arrayQualityMetrics with DESeq2
arrayqualitymetrics deseq2 sample outliers
9.3 years ago rachelwright8 ▴ 10
4
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3
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1.5k
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arrayQualityMetrics error with one color array and log transform
arrayqualitymetrics bugs error
updated 9.5 years ago by 65k • written 9.5 years ago by • 0
4
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4
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1.1k
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arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray hta2.0 arrayqualitymetrics
updated 5.4 years ago by ★ 6.5k • written 5.4 years ago by ▴ 10
3
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1
reply
1.9k
views
arrayQualityMetrics for Agilent one color data
Normalization limma arrayQualityMetrics Normalization limma arrayQualityMetrics
updated 10.4 years ago by 65k • written 10.4 years ago by ▴ 50
2
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1
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1.4k
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arrayQualityMetrics: "intgroup" error, groups dropped from x$pData.
arrayqualitymetrics R
updated 6.4 years ago by ★ 6.5k • written 6.4 years ago by ▴ 30
2
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4
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2.3k
views
arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy microarray arrayqualitymetrics
updated 8.3 years ago by ★ 13k • written 8.3 years ago by ▴ 30
2
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0
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1.1k
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Quality Assessment of one color Agilent arrays?
limma one colour agilent microarrays qualitycontrol arrayqualitymetrics
7.5 years ago Bouzid.a ▴ 20
1
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3
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1.1k
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Error in arrayQualityMetrics
arrayQualityMetrics
updated 6.6 years ago by ★ 6.5k • written 6.6 years ago by • 0
1
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2
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2.5k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase convert sva ringo arrayqualitymetrics
updated 8.1 years ago by 50k • written 8.2 years ago by • 0
1
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3
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1.9k
views
Error arrayQualityMetrics
arrayQualityMetrics
updated 2.5 years ago by ★ 6.5k • written 2.5 years ago by • 0
1
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3
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2.4k
views
Installing arrayQualityMetrics: ERROR: lazy loading failed
arrayqualitymetrics beadarray
7.9 years ago • updated 4.8 years ago Lluís Revilla Sancho ▴ 730
1
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1
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1.3k
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arrayQualityMetrics for outlier detection
arrayQualityMetrics Microarray Outlier
updated 8.5 years ago by ★ 13k • written 8.5 years ago by ▴ 10
1
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2
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2.6k
views
arrayQualityMetrics unable to find an inherited method for function \"platformspecific\", for signature \"character\"
arrayQualityMetrics arrayQualityMetrics
12.2 years ago Guest User ★ 13k
1
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1
reply
784
views
Is it possible to run arrayQualitymetrics or some similar package on a HTAFeatureSet?
arrayQualityMetrics oligo
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 10
0
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0
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980
views
arrayQualityMetrics - how do I use this with an MAList object???
convert arrayQualityMetrics convert arrayQualityMetrics
15.7 years ago Park-Ng, Zaneta ▴ 40
0
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1
reply
951
views
arrayQualityMetrics, Outlier
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ▴ 280 • written 15.7 years ago by ▴ 200
0
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2
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923
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arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 15.8 years ago by ▴ 280 • written 15.8 years ago by ▴ 280
0
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1
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821
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Array quality question
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ★ 13k • written 15.7 years ago by ▴ 50
0
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2
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1.2k
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ArrayQualityMetrics: Problem with labels in plots. A bug??
affyPLM arrayQualityMetrics affyPLM arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.5 years ago by ▴ 40
0
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1
reply
970
views
Error in X11(paste("png::", filename, sep = ""),
arrayQualityMetrics arrayQualityMetrics
updated 15.7 years ago by ★ 2.4k • written 15.7 years ago by ▴ 200
0
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3
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1.2k
views
arrayQualityMetrics
cdf arrayQualityMetrics cdf arrayQualityMetrics
updated 16.4 years ago by ▴ 280 • written 16.4 years ago by ▴ 270
0
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1
reply
836
views
problem with arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.5 years ago by ▴ 450
0
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3
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1.6k
views
arrayQualityMetrics Error
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 14.3 years ago by ▴ 630 • written 14.3 years ago by ▴ 160
0
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8
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5.5k
views
arrayQualityMetrics: Binning grid too coarse for current (small) bandwidth
arrayQualityMetrics arrayQualityMetrics
updated 14.1 years ago by ▴ 110 • written 14.1 years ago by ▴ 50
0
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3
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1.0k
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quality assessment of microarray using arrayQualityMetrics
Microarray Normalization arrayQualityMetrics Microarray Normalization arrayQualityMetrics
updated 14.1 years ago by ★ 13k • written 14.1 years ago by ▴ 70
0
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1
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877
views
arrayQualityMetrics: beutifying the outputs
affy arrayQualityMetrics affy arrayQualityMetrics
updated 14.0 years ago by ▴ 110 • written 14.0 years ago by ▴ 80
0
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0
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859
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Affy exon array equivalents of QC packages (affyPLM, arrayQualityMetrics & affyQCReport)
Cancer affyPLM affyQCReport arrayQualityMetrics Cancer affyPLM affyQCReport
14.0 years ago Daniel Brewer ★ 1.9k
0
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0
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1.2k
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Basic Question about gcrma & exporting to excel > (command not working)
Microarray affy gcrma oligo arrayQualityMetrics DECIPHER Microarray affy gcrma oligo
13.9 years ago Dick Beyer ★ 1.4k
0
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1
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3.0k
views
2 way anova in Bioconductor
Microarray GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics BRAIN
updated 12.8 years ago by ▴ 210 • written 12.8 years ago by ▴ 110
0
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2
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1.2k
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ArrayQualityMetrics: Problem with labels in plots
Annotation arrayQualityMetrics Annotation arrayQualityMetrics
14.5 years ago elliot harrison ▴ 230
0
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1
reply
1.2k
views
QCparameters for Human Exon arrays (arrayQualityMetrics)
cdf affy arrayQualityMetrics cdf affy arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.5 years ago by ▴ 10
0
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1
reply
1.2k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer cdf affy simpleaffy affyQCReport affyio arrayQualityMetrics Cancer cdf affy
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
0
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3
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1.2k
views
ArrayQualityMetrics: Problem with labels in plots. A bug??
arrayQualityMetrics arrayQualityMetrics
updated 14.5 years ago by ▴ 280 • written 14.5 years ago by ▴ 150
0
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0
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684
views
announcing a new version of arrayQualityMetrics in the development branch
GO arrayQualityMetrics GO arrayQualityMetrics
13.2 years ago Wolfgang Huber ★ 13k
0
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1
reply
891
views
Error normalizing merged data sets
arrayQualityMetrics arrayQualityMetrics
updated 14.6 years ago by ▴ 910 • written 14.6 years ago by ▴ 70
0
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4
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1.4k
views
Quality control;Missing value;installation
Cancer cdf affy affyQCReport affyio arrayQualityMetrics Cancer cdf affy affyQCReport
updated 15.7 years ago by ★ 5.5k • written 15.7 years ago by ▴ 200
0
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1
reply
939
views
arrayQualityMetrics: How to observe Hoeffding\'s statistic Da in aqm.maplot object?
arrayQualityMetrics arrayQualityMetrics
updated 10.6 years ago by ★ 13k • written 10.6 years ago by ★ 13k
0
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0
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1.1k
views
quality control of affy Chips for miRNA
miRNA cdf probe affy simpleaffy affyQCReport affycoretools arrayQualityMetrics miRNA cdf
13.2 years ago Assa Yeroslaviz ★ 1.5k
0
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14
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2.1k
views
arrayQualityMetrics
arrayQualityMetrics arrayQualityMetrics
updated 13.1 years ago by ★ 13k • written 13.1 years ago by ▴ 210
0
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1
reply
956
views
arrayQualityMetrics with R 2.13.0 fails
arrayQualityMetrics arrayQualityMetrics
updated 13.1 years ago by ★ 8.2k • written 13.1 years ago by ▴ 20
0
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0
replies
1.4k
views
Go terms attributes not available on Biomart, ensembl
miRNA GO probe limma matchprobes biomaRt arrayQualityMetrics microRNA miRNA GO probe
13.0 years ago chawla ▴ 190
0
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2
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1.3k
views
arrayQualityMEtrics
convert arrayQualityMetrics convert arrayQualityMetrics
updated 13.0 years ago by ★ 13k • written 13.0 years ago by ▴ 210
0
votes
6
replies
1.9k
views
2 way anova in Bioconductor
GO genefilter limma GeneSpring ABarray preprocessCore arrayQualityMetrics GO genefilter
updated 12.9 years ago by ★ 2.0k • written 12.9 years ago by ▴ 110
0
votes
0
replies
897
views
how to make an MA plot with single color agilent microarray?
Microarray limma arrayQualityMetrics Microarray limma arrayQualityMetrics
12.9 years ago Wolfgang Huber ★ 13k
0
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3
replies
627
views
array names in arrayQualityMetrics report
arrayQualityMetrics arrayQualityMetrics
12.7 years ago • updated 12.6 years ago rchavez ▴ 20
0
votes
6
replies
1.4k
views
arrayQualityMetrics NULL XML-node Error; Anyone still getting this?
arrayQualityMetrics arrayQualityMetrics
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 30
0
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3
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1.3k
views
arrayQualityMetrics produces non-interactive PCA plot (Figure 3)
arrayQualityMetrics arrayQualityMetrics
12.4 years ago Vladimir Zhurov ▴ 70
0
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2
replies
1.9k
views
arrayQualityMetrics is not working
arrayQualityMetrics arrayQualityMetrics
updated 13.2 years ago by ★ 13k • written 13.2 years ago by ▴ 60
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Hervé Pagès 16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea() by James W. MacDonald 65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea() by Chris • 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
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Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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