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bioccheck
•
reset
7
votes
2
replies
2.0k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 4.3 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.5k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 4.1 years ago by
Steve Lianoglou
★ 13k • written 4.2 years ago by
pouryany
• 0
0
votes
2
replies
1.4k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
4.7 years ago • updated 4.6 years ago
ullrich
▴ 20
0
votes
2
replies
1.1k
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 4.7 years ago by
shepherl
4.3k • written 4.8 years ago by
wewolski
▴ 10
0
votes
2
replies
2.1k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
5.1 years ago
Hector
• 0
0
votes
1
reply
1.3k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 6.4 years ago by
James W. MacDonald
68k • written 6.4 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.7k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
6.5 years ago
j.flesch
▴ 10
0
votes
12
replies
1.9k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
6.6 years ago
waterincan
• 0
0
votes
2
replies
1.4k
views
BiocCheck package size
BiocCheck
updated 6.7 years ago by
Hervé Pagès
16k • written 6.7 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
6.1k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 7.6 years ago by
shepherl
4.3k • written 7.6 years ago by
xyluo1991
• 0
2
votes
5
replies
2.5k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 7.6 years ago by
Marcel Ramos
700 • written 9.7 years ago by
richierocks
▴ 40
0
votes
1
reply
1.9k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
8.2 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.6k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 8.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.2 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.8k
views
BiocCheck path escape issue
bioccheck
bug
8.7 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.2k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
ihnatova
• 0
3
votes
10
replies
3.7k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 3.3 years ago by
Marek Gierlinski
▴ 30 • written 9.2 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.8k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
9.8 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.5k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
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Comment: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
I updated the above answer today.
Answer: When to use edgeR or limma
by
James W. MacDonald
68k
I would use edgeR's quasi-likelihood model for any analysis with a smaller number of observations (like 3 vs 3 or similar), but if you have…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
The short answer is that limpa reads standard feature-level intensities from Spectronaut or other quantifications tools. limpa is designed …
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Comment: Question about the filterByExpr function inputs in edgeR
by
Gordon Smyth
53k
Regarding edgeR v4 filtering, I didn't mention anything about a minimum count of 10 but rather said "a positive count". So a minimalistic f…
Votes
A: deseq2 - paired samples in 2 sequencing types with very different library sizes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
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