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bioccheck
•
reset
7
votes
2
replies
1.5k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.4 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.2k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.2 years ago by
Steve Lianoglou
★ 13k • written 3.2 years ago by
pouryany
• 0
0
votes
2
replies
1.1k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.7 years ago
ullrich
▴ 20
0
votes
2
replies
878
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.8 years ago by
shepherl
4.1k • written 3.8 years ago by
wewolski
▴ 10
0
votes
2
replies
1.7k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.1 years ago
Hector
• 0
0
votes
1
reply
1.1k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.5 years ago by
James W. MacDonald
67k • written 5.5 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.3k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.5 years ago
j.flesch
▴ 10
0
votes
12
replies
1.4k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.6 years ago
waterincan
• 0
0
votes
2
replies
1.1k
views
BiocCheck package size
BiocCheck
updated 5.8 years ago by
Hervé Pagès
16k • written 5.8 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
5.0k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.6 years ago by
shepherl
4.1k • written 6.6 years ago by
xyluo1991
• 0
2
votes
5
replies
2.2k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.6 years ago by
Marcel Ramos
700 • written 8.7 years ago by
richierocks
▴ 40
0
votes
1
reply
1.6k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.2 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.0k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.2 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.2 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.5k
views
BiocCheck path escape issue
bioccheck
bug
7.8 years ago • updated 7.7 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.0k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
ihnatova
• 0
3
votes
10
replies
3.0k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.3 years ago by
Marek Gierlinski
▴ 30 • written 8.3 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.5k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.8 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.1k
views
Man pages with runnable examples calculation
BiocCheck
updated 8.9 years ago by
Dan Tenenbaum
★ 8.2k • written 8.9 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: build samplesheet and plot profile
by
yf
• 0
![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot
by
Quang NN
▴ 10
I see. Thank you ATpoint!
Votes
A: Doubt about the "zero expression" genes or genes with no reads at all in the co
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
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