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bioccheck
•
reset
7
votes
2
replies
1.6k
views
Format roxgen comment (alternative to formatR)
BiocCheck
written 3.5 years ago by
ZheFrench
▴ 60
5
votes
2
replies
1.2k
views
Coding Style for BioC Package submissions: camelCaps or snake_case?
BiocCheck
style
updated 3.3 years ago by
Steve Lianoglou
★ 13k • written 3.3 years ago by
pouryany
• 0
0
votes
2
replies
1.2k
views
BiocCheck object initialization - NOTE
BiocC
BiocCheck
3.8 years ago
ullrich
▴ 20
0
votes
2
replies
913
views
Error running ExperimentHubData::makeExperimentHubMetadata on Windows 10
BiocCheck
updated 3.9 years ago by
shepherl
4.1k • written 3.9 years ago by
wewolski
▴ 10
0
votes
2
replies
1.8k
views
Installation fails only in Linux... How to debug "ERROR: lazy loading failed for package XXX"?
BiocCheck
Install
martini
4.3 years ago
Hector
• 0
0
votes
1
reply
1.1k
views
BiocCheck gives 'Error in readLines(file, skipNul = TRUE) : cannot open the connection'
BiocCheck
updated 5.6 years ago by
James W. MacDonald
68k • written 5.6 years ago by
zhezhenwang
• 0
1
vote
2
replies
2.3k
views
Dealing With Package Sizes Greater than 5 MB
data
package submission
BiocCheck
5.6 years ago
j.flesch
▴ 10
0
votes
12
replies
1.5k
views
no vignettes directory error during BiocCheck checking [SOLVED]
BiocCheck
5.8 years ago
waterincan
• 0
0
votes
2
replies
1.2k
views
BiocCheck package size
BiocCheck
updated 5.9 years ago by
Hervé Pagès
16k • written 5.9 years ago by
zhang.jianhai
▴ 10
4
votes
6
replies
5.3k
views
WARNING: remove set.seed usage in R code
R
bioccheck
updated 6.7 years ago by
shepherl
4.1k • written 6.7 years ago by
xyluo1991
• 0
2
votes
5
replies
2.2k
views
How do you run BiocCheck from a continuous integration service?
continuous-integration
testing
bioccheck
updated 6.7 years ago by
Marcel Ramos
700 • written 8.8 years ago by
richierocks
▴ 40
0
votes
1
reply
1.6k
views
Advice on finding: "1 lines (0%) are > 80 characters long" - my last BiocCheck NOTE
bioccheck
package development
7.4 years ago
Paul Brennan
▴ 10
6
votes
3
replies
3.1k
views
How to solve "WARNING: Add non-empty \value" with roxygen tags
bioccheck
roxygen2
warning
bioc-devel
package development
updated 7.4 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.4 years ago by
Paul Brennan
▴ 10
1
vote
2
replies
1.5k
views
BiocCheck path escape issue
bioccheck
bug
7.9 years ago
Michael Steinbaugh
▴ 90
0
votes
2
replies
1.0k
views
NOT SUPPORTED... in BioC check report
bioccheck
build/check error
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
ihnatova
• 0
3
votes
10
replies
3.1k
views
BiocCheck incorrectly reports I'm not registered on this site
bioccheck
updated 2.5 years ago by
Marek Gierlinski
▴ 30 • written 8.4 years ago by
david.a.quigley
▴ 10
0
votes
1
reply
1.5k
views
built vignette using knitr
knitr
vignettes
built
bioccheck
no-ASCII
8.9 years ago
kmezhoud
▴ 10
1
vote
3
replies
2.2k
views
Man pages with runnable examples calculation
BiocCheck
updated 9.0 years ago by
Dan Tenenbaum
★ 8.2k • written 9.0 years ago by
liz.ingsimmons
▴ 140
18 results • Page
1 of 1
Recent ...
Replies
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Comment: deseq2 lfc shrinkage with few DEGs
by
Robert
• 0
I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…
Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
by
aitor
• 0
Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…
Comment: Discrepancy between Excel TPP-TR reported values and the Melt Curve reported val
by
James W. MacDonald
68k
You will need to provide a self-contained example, or it is unlikely that anybody could debug any possible issue.
Votes
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
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