Showing : camera • reset
2
votes
3
replies
646
views
Explanation for ROAST results
CAMERA limma
updated 10 days ago by 52k • written 10 days ago by • 0
0
votes
2
replies
413
views
cameraPR() non directional test
CAMERA GeneSetEnrichment
6 weeks ago • updated 5 weeks ago Hugo Varet ▴ 80
3
votes
4
replies
838
views
using limma trend workflow in CAMERA
CAMERA limma
7 months ago Jay • 0
3
votes
3
replies
742
views
One-sided tests with CAMERA-PR
CAMERA limma
updated 7 months ago by 52k • written 7 months ago by ▴ 10
4
votes
5
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1.5k
views
Method to find pathways different between 2 groups
fgsea GSVA CAMERA
11 months ago • updated 10 months ago Chris ▴ 20
3
votes
4
replies
740
views
Help with error using camera() in limma
CAMERA limma
11 months ago Chris ▴ 20
1
vote
3
replies
1.1k
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 13 months ago by 52k • written 13 months ago by ▴ 10
1
vote
3
replies
1.1k
views
Can CAMERA analyze just one particular pathway
pathway ORA limma CAMERA DGE
updated 19 months ago by 52k • written 19 months ago by • 0
0
votes
3
replies
906
views
Battery gene sets for CAMERA limma
CAMERA
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
2
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2
replies
1.0k
views
how to make a group to apply the data to CAMERA
CAMERA
2.9 years ago Akira • 0
4
votes
9
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2.5k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 4.4 years ago by ▴ 750 • written 4.4 years ago by • 0
0
votes
0
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816
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Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
4.5 years ago svlachavas ▴ 840
4
votes
11
replies
2.9k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 5.3 years ago by ★ 3.4k • written 5.3 years ago by ▴ 10
0
votes
2
replies
1.9k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 6.4 years ago by 52k • written 6.4 years ago by • 0
10
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2
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3.4k
views
How barcode-plot enrichment is calculated?
limma barcodeplot camera
updated 6.5 years ago by 52k • written 6.5 years ago by • 0
7
votes
2
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1.8k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 6.6 years ago by 52k • written 6.6 years ago by ▴ 60
0
votes
0
replies
1.3k
views
CAMERA error - isotopeProportionFits
camera metabolomics
7.2 years ago bhgyu ▴ 30
1
vote
2
replies
1.8k
views
Package won't recognise raw data files
camera metabolomics r
7.4 years ago bhgyu ▴ 30
0
votes
1
reply
1.6k
views
limma: Camera() about the input data
limma camera
updated 7.5 years ago by 52k • written 7.5 years ago by • 0
3
votes
1
reply
1.4k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma camera
updated 7.6 years ago by 52k • written 7.6 years ago by ▴ 40
0
votes
1
reply
1.4k
views
LIMMA Camera missing IDs.
limma camera
updated 7.7 years ago by 52k • written 7.7 years ago by • 0
0
votes
6
replies
2.2k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 7.8 years ago by 68k • written 7.8 years ago by ▴ 40
1
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0
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1.2k
views
Meta Analysis on CAMERA results
limma camera cohen d meta analysis
8.1 years ago Andy91 ▴ 60
0
votes
7
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2.9k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 8.1 years ago by 52k • written 8.1 years ago by • 0
3
votes
2
replies
1.4k
views
how to deal with technical replicates in limma camera
limma camera
updated 8.3 years ago by 52k • written 8.3 years ago by ▴ 20
0
votes
2
replies
1.7k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 8.5 years ago by 52k • written 8.5 years ago by • 0
0
votes
3
replies
2.3k
views
limma camera function Multiple contrasts
limma microarray contrast camera
updated 8.5 years ago by 52k • written 8.5 years ago by ▴ 20
1
vote
3
replies
2.3k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS xcmx CAMERA
updated 8.5 years ago by ▴ 20 • written 8.5 years ago by • 0
3
votes
7
replies
2.1k
views
major camera change from limma 3.22 to 3.28?
limma camera
updated 8.6 years ago by 52k • written 8.6 years ago by ▴ 10
3
votes
4
replies
1.9k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 8.8 years ago by 52k • written 8.8 years ago by ▴ 20
2
votes
4
replies
2.1k
views
Getting gene ID's from camera results
limma camera
updated 8.9 years ago by ▴ 150 • written 8.9 years ago by ▴ 110
1
vote
5
replies
2.4k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
9.0 years ago claire.n.levy ▴ 10
2
votes
4
replies
3.5k
views
Arguments for camera (gene set analysis)
camera GSEA
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 10
3
votes
4
replies
2.3k
views
Random effects with limma's camera()
limma camera duplicatecorrelation
updated 9.1 years ago by 52k • written 9.1 years ago by ▴ 30
8
votes
4
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6.6k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 9.2 years ago by ★ 13k • written 9.2 years ago by ▴ 180
0
votes
1
reply
1.4k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 9.2 years ago by 52k • written 11.8 years ago by ▴ 110
4
votes
12
replies
3.0k
views
Limma Camera error
limma camera
9.4 years ago ea1402 ▴ 20
5
votes
2
replies
2.5k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 9.6 years ago by 52k • written 9.6 years ago by ▴ 150
10
votes
9
replies
7.5k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 9.7 years ago by ▴ 20 • written 9.8 years ago by ▴ 60
8
votes
4
replies
2.1k
views
NaN results on some pathways in CAMERA
camera edger pathway analysis
updated 9.8 years ago by 52k • written 9.8 years ago by ★ 7.9k
3
votes
4
replies
5.7k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 9.9 years ago by 52k • written 10.5 years ago by • 0
0
votes
1
reply
3.0k
views
CAMERA limma package. Gene set analysis.
limma camera
updated 9.9 years ago by 52k • written 9.9 years ago by • 0
0
votes
2
replies
1.5k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 10.2 years ago by 52k • written 10.2 years ago by • 0
0
votes
3
replies
1.7k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 10.7 years ago by ★ 13k • written 10.7 years ago by ★ 13k
0
votes
0
replies
2.1k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
11.0 years ago Robert Ivanek ▴ 750
0
votes
0
replies
1.3k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
11.3 years ago Charles Determan Jr ▴ 140
0
votes
0
replies
1.5k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
11.4 years ago Gordon Smyth 52k
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
11.5 years ago Pekka Kohonen ▴ 190
0
votes
1
reply
1.8k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 11.5 years ago by ★ 11k • written 11.5 years ago by ▴ 40
0
votes
2
replies
2.2k
views
romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 11.8 years ago by 52k • written 11.8 years ago by ▴ 190
50 results • Page 1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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