Showing : camera • reset
1
vote
3
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333
views
CAMERA + Gene Ontology Gene Sets
GO limma CAMERA
updated 10 weeks ago by 50k • written 10 weeks ago by ▴ 10
1
vote
3
replies
621
views
Can CAMERA analyze just one particular pathway
pathway ORA limma CAMERA DGE
updated 8 months ago by 50k • written 8 months ago by • 0
0
votes
3
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586
views
Battery gene sets for CAMERA limma
CAMERA
updated 13 months ago by 65k • written 13 months ago by • 0
2
votes
2
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796
views
how to make a group to apply the data to CAMERA
CAMERA
23 months ago Akira • 0
4
votes
9
replies
1.8k
views
HELP! Troubleshooting Installing EBImage Package
Install CAMERA insta PackageType
updated 3.4 years ago by ▴ 750 • written 3.4 years ago by • 0
0
votes
0
replies
616
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Interpretation of mroast p-value results for gene set testing of specific molecular signatures using microarray data
mroast camera gene set testing
3.6 years ago svlachavas ▴ 830
4
votes
11
replies
2.0k
views
Dealing with duplicated genes in camera gene set testing
limma camera gene set testing ensembl
updated 4.4 years ago by ★ 3.3k • written 4.4 years ago by ▴ 10
0
votes
2
replies
1.4k
views
Removing redundancy in Reactome pathways after performing gene set analysis with camera
camera limma gene set analysis gene set enrichment
updated 5.5 years ago by 50k • written 5.5 years ago by • 0
10
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2
replies
2.9k
views
How barcode-plot enrichment is calculated?
limma barcodeplot camera
updated 5.6 years ago by 50k • written 5.6 years ago by • 0
7
votes
2
replies
1.3k
views
Pre-ranked camera gene set testing with edgeR results
limma camera cameraPR edgeR gene set testing
updated 5.6 years ago by 50k • written 5.6 years ago by ▴ 60
0
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0
replies
1.1k
views
CAMERA error - isotopeProportionFits
camera metabolomics
6.3 years ago bhgyu ▴ 30
1
vote
2
replies
1.5k
views
Package won't recognise raw data files
camera metabolomics r
6.4 years ago bhgyu ▴ 30
0
votes
1
reply
1.3k
views
limma: Camera() about the input data
limma camera
updated 6.6 years ago by 50k • written 6.6 years ago by • 0
3
votes
1
reply
1.1k
views
No gene hits in cameraPR - due to bug dropping statistic names?
limma camera
updated 6.6 years ago by 50k • written 6.6 years ago by ▴ 40
0
votes
1
reply
1.2k
views
LIMMA Camera missing IDs.
limma camera
updated 6.7 years ago by 50k • written 6.7 years ago by • 0
0
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6
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1.8k
views
Different results obtained from mroast and camera from Deseq2 counts
limma camera mroast tximport
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 40
1
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0
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1.0k
views
Meta Analysis on CAMERA results
limma camera cohen d meta analysis
7.2 years ago Andy91 ▴ 60
0
votes
7
replies
2.4k
views
Camera gene set interpretation
limma camera gene set analysis gene set enrichment
updated 7.2 years ago by 50k • written 7.2 years ago by • 0
3
votes
2
replies
1.2k
views
how to deal with technical replicates in limma camera
limma camera
updated 7.4 years ago by 50k • written 7.4 years ago by ▴ 20
0
votes
2
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1.5k
views
using camera/roast/romer to find enriched gene sets from proteomics data
limma proteomics camera mroast romer
updated 7.6 years ago by 50k • written 7.6 years ago by • 0
0
votes
3
replies
1.9k
views
limma camera function Multiple contrasts
limma microarray contrast camera
updated 7.6 years ago by 50k • written 7.6 years ago by ▴ 20
1
vote
3
replies
1.8k
views
Is it possible to visualise the content of a xcmsSet object / the output of peak picking ?
metaMS xcmx CAMERA
updated 7.6 years ago by ▴ 20 • written 7.6 years ago by • 0
3
votes
7
replies
1.7k
views
major camera change from limma 3.22 to 3.28?
limma camera
updated 7.7 years ago by 50k • written 7.7 years ago by ▴ 10
3
votes
4
replies
1.5k
views
Competitive gene set testing between two sets of genes
gene set testing camera edger
updated 7.8 years ago by 50k • written 7.8 years ago by ▴ 20
2
votes
4
replies
1.7k
views
Getting gene ID's from camera results
limma camera
updated 8.0 years ago by ▴ 150 • written 8.0 years ago by ▴ 110
1
vote
5
replies
2.1k
views
Confused by results from CAMERA gene set testing
limma camera gene set testing
8.0 years ago claire.n.levy ▴ 10
2
votes
4
replies
3.0k
views
Arguments for camera (gene set analysis)
camera GSEA
updated 8.2 years ago by ★ 13k • written 8.2 years ago by ▴ 10
3
votes
4
replies
1.8k
views
Random effects with limma's camera()
limma camera duplicatecorrelation
updated 8.2 years ago by 50k • written 8.2 years ago by ▴ 30
8
votes
4
replies
5.5k
views
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
limma edger mroast romer camera
updated 8.2 years ago by ★ 13k • written 8.2 years ago by ▴ 170
0
votes
1
reply
1.2k
views
romer implementation in edgeR
edgeR CAMERA edgeR CAMERA
updated 8.2 years ago by 50k • written 10.8 years ago by ▴ 110
4
votes
12
replies
2.4k
views
Limma Camera error
limma camera
8.5 years ago ea1402 ▴ 20
5
votes
2
replies
2.1k
views
Using limma::roast/camera/romer etc from DESeq2
deseq2 edger limma romer camera
updated 8.7 years ago by 50k • written 8.7 years ago by ▴ 150
10
votes
9
replies
6.4k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 8.8 years ago by ▴ 20 • written 8.8 years ago by ▴ 60
8
votes
4
replies
1.7k
views
NaN results on some pathways in CAMERA
camera edger pathway analysis
updated 8.9 years ago by 50k • written 8.9 years ago by ★ 7.9k
3
votes
4
replies
5.2k
views
Gene set analysis with CAMERA
limma gene set analysis camera
updated 9.0 years ago by 50k • written 9.5 years ago by • 0
0
votes
1
reply
2.6k
views
CAMERA limma package. Gene set analysis.
limma camera
updated 9.0 years ago by 50k • written 9.0 years ago by • 0
0
votes
2
replies
1.3k
views
Using camera on a filtered expression matrix
camera limma gene set analysis
updated 9.2 years ago by 50k • written 9.2 years ago by • 0
0
votes
3
replies
1.4k
views
CAMERA on Mac OS X 10.9 (Mavericks)
CAMERA CAMERA
updated 9.7 years ago by ★ 13k • written 9.7 years ago by ★ 13k
0
votes
0
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1.9k
views
IdeogramTrack and bigWig file errors in Gviz
GO Network rtracklayer CAMERA Gviz GO Network rtracklayer CAMERA Gviz
10.1 years ago Robert Ivanek ▴ 730
0
votes
0
replies
1.1k
views
CAMERA output to Neutral Monoisotopic Mass
convert CAMERA convert CAMERA
10.3 years ago Charles Determan Jr ▴ 140
0
votes
0
replies
1.3k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
10.5 years ago Gordon Smyth 50k
0
votes
0
replies
1.2k
views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
10.5 years ago Pekka Kohonen ▴ 190
0
votes
1
reply
1.5k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO Network rtracklayer CAMERA chipseq Gviz ChIPSeq GO Network rtracklayer Gviz
updated 10.6 years ago by ★ 11k • written 10.6 years ago by ▴ 40
0
votes
2
replies
1.9k
views
romer implementation in edgeR
limma edgeR CAMERA limma edgeR CAMERA
updated 10.8 years ago by 50k • written 10.8 years ago by ▴ 190
0
votes
2
replies
1.4k
views
IdeogramTrack and bigWig file errors in Gviz
Network rtracklayer CAMERA Gviz Network rtracklayer CAMERA Gviz
11.0 years ago Michael Lawrence ★ 11k
0
votes
6
replies
1.9k
views
IdeogramTrack and bigWig file errors in Gviz
ChIPSeq GO rtracklayer CAMERA chipseq Gviz ChIPSeq GO rtracklayer CAMERA chipseq Gviz
updated 11.0 years ago by ▴ 730 • written 11.0 years ago by ★ 13k
0
votes
3
replies
2.2k
views
CAMERA for non-directional gene sets
GO limma CAMERA GO limma CAMERA
updated 11.6 years ago by ▴ 120 • written 11.6 years ago by ▴ 20
0
votes
0
replies
1.2k
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010 (IEEE CBMS 2010)
Proteomics CAMERA Proteomics CAMERA
13.9 years ago Amandeep Sidhu ▴ 20
0
votes
0
replies
1.2k
views
CFP: 23rd IEEE International Symposium on Computer-Based Medical Systems 2010
Proteomics CAMERA Proteomics CAMERA
14.0 years ago Amandeep Sidhu ▴ 20
49 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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