Showing : correlation • reset
1
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QSEA- Extraction of Normalized methylation across the samples
qsea ngsReports correlation
written 10 months ago by ▴ 10
0
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1
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1.2k
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Human genes correlation to Bacterial genes
correlation pearsoncorrelation rna-seq differential gene expression
updated 15 months ago by ★ 4.7k • written 6.9 years ago by • 0
0
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2
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1.9k
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using WGCNA, positive or negative corrlation between genes composing modules.
correlation wgcna network
updated 9 months ago by • 0 • written 2.3 years ago by • 0
0
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1
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1.3k
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WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub correlation eigen WGCNA
updated 15 months ago by • 0 • written 3.2 years ago by • 0
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1
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1.2k
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Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq Correlation DESeq2
updated 2.6 years ago by 43k • written 2.6 years ago by • 0
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1
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1.3k
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spearman correlation
correlation sperarman
updated 3.4 years ago by ★ 4.7k • written 3.4 years ago by • 0
15
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17
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27k
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WGCNA: What is `soft thresholding`?
wgcna network analysis network correlation coexpression
updated 4.3 years ago by ▴ 760 • written 8.5 years ago by ▴ 40
5
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1
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2.1k
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Best practice for correlating scRNA seq to bulkRNA seq data
seurat edgeR spearman correlation scRNAseq
updated 4.9 years ago by ★ 28k • written 4.9 years ago by ▴ 20
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2
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1.2k
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Correlation plot how to improve?
plot correlation
5.4 years ago annkolman78 • 0
4
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7
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1.7k
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Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2 correlation
6.3 years ago Cornwell, Adam ▴ 110
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3
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1.5k
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Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
6.4 years ago faramer86 • 0
0
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1
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1.3k
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How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
6.7 years ago adriana.gallego.02 ▴ 20
0
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1
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1.4k
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Differential Coexpression Analysis
differential analysis differential gene expression coexpression correlation
updated 7.0 years ago by ★ 3.0k • written 7.0 years ago by ▴ 20
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1
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1.0k
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Is there any prerequisites for taking correlation in genomic data?
correlation
updated 7.0 years ago by ▴ 420 • written 7.1 years ago by ▴ 20
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6
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1.8k
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expression correlation on an ExpressionSet
ExpressionSet caseControl Correlation Plot
updated 7.8 years ago by • 0 • written 8.1 years ago by ▴ 10
1
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2
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2.3k
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Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 8.0 years ago by ★ 5.2k • written 8.0 years ago by • 0
7
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3
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3.9k
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plotting correlation between samples
correlation
updated 8.0 years ago by ★ 28k • written 8.0 years ago by ▴ 10
4
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9
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3.9k
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WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA similarity correlation bioconductor rnaseq
updated 8.1 years ago by ★ 3.0k • written 8.1 years ago by ▴ 40
4
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4
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1.7k
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Correlation analysis taking into account multiple correlations
edger rna-seq correlation
updated 8.5 years ago by ▴ 270 • written 8.5 years ago by ▴ 10
2
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7
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5.2k
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How to create "trait data" file for WGCNA
wgcna coexpression correlation microarray
updated 9.1 years ago by ★ 3.0k • written 9.1 years ago by ▴ 20
2
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4
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2.7k
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Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2 correlation deseq linear
updated 9.6 years ago by ★ 7.9k • written 9.6 years ago by • 0
3
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3
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1.6k
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Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 9.9 years ago by 21k • written 9.9 years ago by ★ 2.1k
22 results • Page 1 of 1
Recent ...
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Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Hoover • 0
I got it! ([Drift Boss][1]) [1]: https://driftbossgame.co
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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