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correlation
•
reset
1
vote
2
replies
627
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 17 months ago by
Researcher
▴ 10
0
votes
1
reply
1.3k
views
Human genes correlation to Bacterial genes
correlation
pearsoncorrelation
rna-seq
differential gene expression
updated 22 months ago by
ATpoint
★ 5.0k • written 7.5 years ago by
saad_k6
• 0
0
votes
2
replies
2.4k
views
using WGCNA, positive or negative corrlation between genes composing modules.
correlation
wgcna
network
updated 17 months ago by
mariakenneth147
• 0 • written 2.9 years ago by
pharamac
• 0
0
votes
1
reply
1.5k
views
WGCNA correlation sign differences between eigen genes/ hub genes and clinical traits
hub
correlation
eigen
WGCNA
updated 22 months ago by
Vanatta
• 0 • written 3.8 years ago by
mairah.khan
• 0
0
votes
1
reply
1.4k
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq
Correlation
DESeq2
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
keshav.prasad.gubbi
• 0
1
vote
1
reply
1.5k
views
spearman correlation
correlation
sperarman
updated 4.0 years ago by
ATpoint
★ 5.0k • written 4.0 years ago by
info@shi
• 0
15
votes
17
replies
30k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 4.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.1 years ago by
jol.espinoz
▴ 40
5
votes
1
reply
2.4k
views
Best practice for correlating scRNA seq to bulkRNA seq data
seurat
edgeR
spearman
correlation
scRNAseq
updated 5.5 years ago by
Aaron Lun
★ 29k • written 5.5 years ago by
tobias-messmer
▴ 20
0
votes
2
replies
1.3k
views
Correlation plot how to improve?
plot
correlation
6.0 years ago
annkolman78
• 0
4
votes
7
replies
1.9k
views
Are spurious correlations possible in correlating two DESeq2 foldchanges computed using the same reference sample group?
deseq2
correlation
6.9 years ago
Cornwell, Adam
▴ 110
0
votes
3
replies
1.7k
views
Coverage profile comparison
Targeted sequencing
correlation
coverage
euclid
clustering
7.0 years ago
faramer86
• 0
0
votes
1
reply
1.4k
views
How can I do a correlation heatmap between two groups of matrices (metabolomic and transcriptomic data)
correlation
7.3 years ago
adriana.gallego.02
▴ 20
0
votes
1
reply
1.5k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 7.6 years ago by
Peter Langfelder
★ 3.0k • written 7.6 years ago by
hkarakurt
▴ 20
2
votes
1
reply
1.1k
views
Is there any prerequisites for taking correlation in genomic data?
correlation
updated 7.6 years ago by
chris86
▴ 420 • written 7.6 years ago by
Arman Shahrisa
▴ 20
0
votes
6
replies
2.0k
views
expression correlation on an ExpressionSet
ExpressionSet
caseControl
Correlation
Plot
updated 8.4 years ago by
vulegom
• 0 • written 8.7 years ago by
DataFanatic
▴ 10
1
vote
2
replies
2.5k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind
heatmap
correlation
updated 8.6 years ago by
Rory Stark
★ 5.2k • written 8.6 years ago by
a.bahraini88
• 0
7
votes
3
replies
4.2k
views
plotting correlation between samples
correlation
updated 8.6 years ago by
Aaron Lun
★ 29k • written 8.6 years ago by
teresati
▴ 10
4
votes
9
replies
4.3k
views
WGCNA | pickSoftThreshold.fromSimilarity not working for input similarity matrix
WGCNA
similarity
correlation
bioconductor
rnaseq
updated 8.7 years ago by
Peter Langfelder
★ 3.0k • written 8.7 years ago by
jol.espinoz
▴ 40
4
votes
4
replies
1.9k
views
Correlation analysis taking into account multiple correlations
edger
rna-seq
correlation
updated 9.1 years ago by
Andrew_McDavid
▴ 280 • written 9.1 years ago by
jhj89
▴ 10
2
votes
7
replies
5.6k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 9.6 years ago by
Peter Langfelder
★ 3.0k • written 9.7 years ago by
shalinisonar13
▴ 20
2
votes
4
replies
2.9k
views
Can DESeq correlate genes expression patterns with a numerical sample factor?
deseq2
correlation
deseq
linear
updated 10.2 years ago by
Ryan C. Thompson
★ 7.9k • written 10.2 years ago by
matt.arno
• 0
3
votes
3
replies
1.8k
views
Correlation/clustering of numeric (continuous) and categorical values
correlation
updated 10.5 years ago by
Sean Davis
21k • written 10.5 years ago by
Johannes Rainer
★ 2.1k
22 results • Page
1 of 1
Recent ...
Replies
Comment: Help with defining groups
by
Phinney, Brett
▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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