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Showing :
crisprseek
•
reset
6
votes
12
replies
1.8k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek
software error
4.5 years ago
nils.hassel
• 0
6
votes
14
replies
2.0k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.7 years ago by
Julie Zhu
★ 4.3k • written 3.7 years ago by
Dawid G. Nowak
▴ 40
5
votes
11
replies
1.4k
views
CRISPRseek Unusual Error
crisprseek
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Dawid G. Nowak
▴ 40
5
votes
24
replies
3.4k
views
CRISPRseek scoring clarification
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
elspeth.ransom
• 0
4
votes
12
replies
1.7k
views
CFDscore calculations used in CRISPRseek
crisprseek
CFDscore
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
Dawid G. Nowak
▴ 40
4
votes
1
reply
772
views
CRISPRSeek Results files column interpretation
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
xenon
▴ 40
4
votes
3
replies
865
views
Improving the run-time of offTargetAnalysis()
CRISPRseek
updated 3.0 years ago by
Daniel
• 0 • written 3.5 years ago by
xenon
▴ 40
3
votes
2
replies
1.2k
views
CRISPRseek with (rough) Draft Genome
crisprseek
grna searching
bsgenome forge
offtarget analysis
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
rajewski23
• 0
3
votes
10
replies
1.4k
views
CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coercion
CRISPRseek
Error in hash
NAs introduced by coercion
updated 3.9 years ago by
Julie Zhu
★ 4.3k • written 3.9 years ago by
nils.hassel
• 0
2
votes
7
replies
2.7k
views
CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") interpretation
CRISPRseek
3.4 years ago • updated 3.3 years ago
xenon
▴ 40
2
votes
3
replies
1.7k
views
offTargetAnalysis() Error in weights %*% mismatch.pos : non-conformable arguments (CRISPRSeek)
CRISPRseek
updated 6.7 years ago by
Julie Zhu
★ 4.3k • written 6.7 years ago by
robert_w_link
• 0
2
votes
3
replies
1.1k
views
offTargetAnalysis takes super long
CRISPRseek
updated 8.6 years ago by
Julie Zhu
★ 4.3k • written 8.6 years ago by
Dawid G. Nowak
▴ 40
2
votes
27
replies
4.0k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.6 years ago • updated 8.5 years ago
alexgraehl
▴ 20
1
vote
2
replies
895
views
CRISPRseek package: offTargetAnalysis() error with mouse genome
CRISPRseek
2.4 years ago
nderian
▴ 10
1
vote
2
replies
963
views
How to understand Summary.xls in output of CRISPRseek
crisprseek
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
Ou, Jianhong
★ 1.3k
1
vote
2
replies
900
views
A unexpected error occurred when using CRISPRseek package
crisprseek
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
prokaryote23
• 0
1
vote
1
reply
1.4k
views
News:
CRISPRseek: generate gRNAs in bed format, useScore argument
CRISPRseek
News
updated 9.5 years ago by
orkanilbay
• 0 • written 9.5 years ago by
Julie Zhu
★ 4.3k
1
vote
1
reply
751
views
CRISPRSeek module output - summary file: topN.offtargettotalscore
CRISPRSeek
updated 5.2 years ago by
Julie Zhu
★ 4.3k • written 5.2 years ago by
Nan
• 0
1
vote
0
replies
1.1k
views
CRISPRseek orgAnn argument
crisprseek
9.6 years ago
Julie Zhu
★ 4.3k
1
vote
8
replies
1.7k
views
CRISPRseek with genome not available in BSgenome
bsgenome
crisprseek
updated 6.8 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
millepattes.intersites
• 0
1
vote
1
reply
670
views
Using a DNAStringSet of guideRNA+PAM sequences in offTargetAnalysis()
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
xenon
▴ 40
1
vote
1
reply
1.4k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.3 years ago by
Julie Zhu
★ 4.3k • written 8.3 years ago by
alexgraehl
▴ 20
1
vote
2
replies
1.1k
views
CRISPRseek searching requirement
CRISPRSEEK
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
Daniel
• 0
1
vote
9
replies
2.3k
views
CRISPRseek for Arabidopsis
crisprseek
arabidopsis thaliana
updated 9.4 years ago by
Julie Zhu
★ 4.3k • written 9.5 years ago by
jeremyatwsu
• 0
0
votes
0
replies
1.1k
views
Off Target region
offtarget analysis
crisprseek
6.7 years ago
susobhanbaidya
• 0
0
votes
0
replies
827
views
Interpretation of Score vs gRNA efficacy
crisprseek
6.6 years ago
robert_w_link
• 0
0
votes
1
reply
947
views
CFD scores for searchHits?
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
1
reply
1.3k
views
could not find function "hash"
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
6
replies
1.7k
views
CRISPRseek CFD score
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
2
replies
953
views
Does CRISPRSEEK work on previously unknown genomes?
crisprseek
unknown genome
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
yhuang2
• 0
0
votes
1
reply
1.2k
views
CRISPRseek gRNA efficacy
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
joyce
• 0
0
votes
0
replies
1.5k
views
replacement has X rows, data has Y rows
crisprseek
6.3 years ago
robert_w_link
• 0
0
votes
5
replies
1.4k
views
CRISPRseek offTargetAnalysis errors
CRISPRseek
6.3 years ago
joyce
• 0
0
votes
1
reply
910
views
CRISPRseek: offTargetAnalysis -> buildFeatureVectorForScoring increase max.mismatch error
crisprseek
offtargetanalysis
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
jacob.bradford
• 0
0
votes
2
replies
1.3k
views
Problem installing CRISPRseek
crisprseek
updated 5.6 years ago by
Julie Zhu
★ 4.3k • written 5.6 years ago by
ldumas9
• 0
0
votes
4
replies
1.0k
views
CRISPRseek:::findgRNAs paired gRNAs with PAM inward orientation
CRISPRseek
paired gRNA
updated 4.9 years ago by
Julie Zhu
★ 4.3k • written 4.9 years ago by
saba.parvez
• 0
0
votes
1
reply
805
views
CRISPRseek - adding CRISPRscan score
CRISPRseek
updated 4.5 years ago by
Julie Zhu
★ 4.3k • written 4.5 years ago by
ptgriffin
• 0
0
votes
5
replies
1.1k
views
CRISPRseek help to generate gRNAs for CRISPRi library
CRISPRseek
updated 4.4 years ago by
Julie Zhu
★ 4.3k • written 4.4 years ago by
Lucka387
• 0
0
votes
2
replies
744
views
gRNA design for prime editing using CRISPRseek
CRISPRseek
pegRNA
prime editing gRNA
updated 4.0 years ago by
Julie Zhu
★ 4.3k • written 4.0 years ago by
giti_gazisoltani
• 0
0
votes
1
reply
628
views
CRISPRseek base editor
CRISPRseek
updated 3.5 years ago by
Julie Zhu
★ 4.3k • written 3.5 years ago by
s.islambey
• 0
0
votes
5
replies
3.0k
views
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows
CRISPRseek
2.4 years ago • updated 2.3 years ago
Miguel
• 0
0
votes
2
replies
779
views
CRISPRseek package: findgRNAs error
CRISPRseek
2.5 years ago
nderian
▴ 10
0
votes
2
replies
759
views
CRISPRseek package: 5’ PAM?
CRISPRseek
3.1 years ago
nderian
▴ 10
0
votes
1
reply
566
views
extendedSequences length is not the required for DeepCpf1 (34bp)
CRISPRseek
22 months ago
Miguel
• 0
0
votes
1
reply
998
views
CRISPRseek offTargetAnalysis error
crisprseek
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
joyce
• 0
0
votes
2
replies
1.8k
views
TxDb file for Drerio (ie zebrafish)
Organism
zebrafish
CRISPRseek
Organism
zebrafish
CRISPRseek
updated 10.2 years ago by
James W. MacDonald
65k • written 10.2 years ago by
Brodsky, Michael
▴ 10
0
votes
0
replies
1.1k
views
CRISPRseek: searchHits() optimization
Preprocessing
BSgenome
safe
BSgenome
CRISPRseek
Preprocessing
BSgenome
safe
BSgenome
9.8 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
2.3k
views
CRISPRseek question on scoring
CRISPRseek
9.7 years ago • updated 5.2 years ago
Julie Zhu
★ 4.3k
0
votes
8
replies
2.0k
views
CRISPRseek: annotate gene
CRISPRseek
9.5 years ago • updated 8.9 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.8k
views
CRISPRseek: alternative PAM sequence from NmCas9
CRISPRseek
gRNA searching
offtarget analysis
NmCas9
8.9 years ago
Julie Zhu
★ 4.3k
50 results • Page
1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Gordon Smyth
50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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