Showing : diffBind • reset
2
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2.1k
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How to use Diffbind as complete beginner?
diffbind chip-seq
updated 8.6 years ago by ▴ 670 • written 8.6 years ago by ▴ 10
0
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1
reply
620
views
Question: DiffBind dba.report() output: the output when setting bCounts=TRUE
diffbind
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by • 0
0
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1
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1.0k
views
Diffbind - "dba.report" showing values with less significant figures?
diffbind dba.report
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by • 0
0
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0
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937
views
DiffBind: modify overlap without re-counting?
diffbind
8.6 years ago Roger • 0
0
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1
reply
1.4k
views
DiffBind :Retrieve count value from Diffbind by dab.report
diffbind
updated 8.6 years ago by ★ 5.2k • written 8.7 years ago by ▴ 40
0
votes
3
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1.3k
views
Diffbind: retrieve raw peaks per sample
diffbind
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by ▴ 60
0
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1
reply
982
views
Binding site overlaps
diffbind
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by • 0
5
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17
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2.9k
views
DiffBind : More fragment sizes than libraries
diffbind
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by ▴ 60
0
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14
replies
3.8k
views
got 0 significant differential bound (DB)
diffbind
8.7 years ago • updated 8.6 years ago mforoo1 • 0
1
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3
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1.6k
views
ChIPQC installation does not force latest DiffBind version
chipqc diffbind chipqcreport
updated 8.6 years ago by ▴ 420 • written 8.6 years ago by ▴ 50
0
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1
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1.6k
views
DiffBind error Error in pv.getPlotData
DiffBind
updated 8.6 years ago by ★ 5.2k • written 8.6 years ago by ▴ 10
6
votes
16
replies
7.2k
views
DiffBind Batch Effect
diffbind atac
8.7 years ago • updated 8.6 years ago niu.shengyong ▴ 10
0
votes
1
reply
1.5k
views
bug in dba.overlap (dba.plotVenn)
DiffBind bugs
updated 8.7 years ago by ★ 5.2k • written 8.7 years ago by • 0
0
votes
3
replies
3.0k
views
Venn diagram using contrasts in DiffBind
diffbind
updated 8.7 years ago by ★ 5.2k • written 8.7 years ago by • 0
1
vote
8
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2.7k
views
Global reduction of epigenetic factors (regularized log transformation DESeq2) ~ Diffbind
deseq2 diffbind
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 40
1
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2
replies
1.6k
views
Diffbind results - non uniform width
diffbind dba.count
updated 8.7 years ago by ★ 5.2k • written 8.7 years ago by ▴ 70
2
votes
6
replies
3.7k
views
DiffBind dba.report() output: Is "concentration" normalized?
DiffBind
updated 4.9 years ago by ★ 5.2k • written 8.7 years ago by • 0
2
votes
4
replies
2.3k
views
RStudio quits unexpectedly while running DiffBind on R 3.4.0
software error diffbind rstudio abort quit
updated 8.7 years ago by ▴ 670 • written 8.7 years ago by • 0
0
votes
14
replies
3.3k
views
Path to file in windows
bioconductor R windows diffbind
updated 8.7 years ago by ▴ 670 • written 8.8 years ago by • 0
1
vote
3
replies
1.5k
views
Diffbind dba.report error
diffbind
8.8 years ago j.bergenstrahle ▴ 90
1
vote
7
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4.7k
views
DiffBind R package issue
diffbind atac-seq
updated 8.8 years ago by ★ 5.2k • written 8.8 years ago by ▴ 10
2
votes
2
replies
1.4k
views
Diffbind data extraction after DE analysis
diffbind
updated 8.8 years ago by ▴ 670 • written 8.8 years ago by ▴ 90
1
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2
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1.9k
views
Low FDR for significant peaks in DiffBind output
diffbind
8.8 years ago Silvia • 0
0
votes
2
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1.5k
views
Diffbind: getting the raw reads
edger diffbind raw reads
8.8 years ago veronique.storme • 0
0
votes
1
reply
1.2k
views
Error in dba.count
R diffbind
updated 8.8 years ago by 68k • written 8.8 years ago by • 0
1
vote
3
replies
2.0k
views
Subsampling bam file - error DiffBind
diffbind samtools
updated 8.8 years ago by ▴ 670 • written 8.8 years ago by • 0
0
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6
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3.7k
views
Error in lfproc(x, y, weights = weights, cens = cens,... : newsplit: out of vertex space in dba.analyze(diff_contrast, method=DBA_DESEQ2)
atac-seq diffbind
8.8 years ago zhaolin20042008 • 0
1
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1
reply
2.0k
views
DiffBind: How could I debug estimateDispersionsFit (required by DBA_DESEQ2)
atac-seq diffbind
8.8 years ago zhaolin20042008 • 0
0
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2
replies
1.4k
views
DiffBind absence of reads
diffbind reads bamfiles
updated 8.8 years ago by ★ 5.2k • written 8.8 years ago by • 0
1
vote
7
replies
3.5k
views
loading dba.plotVolcano in DiffBind
diffbind chipseq atac-seq rory stark
updated 8.8 years ago by ★ 5.2k • written 8.8 years ago by • 0
1
vote
1
reply
924
views
Sorting the VIEW index in ascending/descending order
R diffbind
updated 8.8 years ago by 700 • written 8.8 years ago by ▴ 60
1
vote
2
replies
2.7k
views
Diffbind: how to include all the samples in the heatmap while using the contrast
diffbind heatmap correlation
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by • 0
0
votes
1
reply
1.8k
views
Using Diffbind on ATAC data - adapter offset issue
Diffbind Atac adapters
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 70
2
votes
3
replies
11k
views
DiffBind for ATAC-seq
atac-seq diffbind macs2 macs peak finding
updated 8.9 years ago by ▴ 70 • written 9.4 years ago by ▴ 50
2
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1
reply
1.4k
views
Differences among phenotypes with different subgroups
design and contrast matrix statistical modeling edger DiffBind
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 10
0
votes
5
replies
2.7k
views
ChIPseq diffbind merging peaks
diffbind merging_peaks
9.0 years ago • updated 8.9 years ago veronique.storme • 0
3
votes
4
replies
3.0k
views
DiffBind: error with dba(sampleSheet="samples.csv")
R DiffBind
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by • 0
2
votes
3
replies
3.0k
views
DiffBind MA plot
diffbind ma plot
updated 8.9 years ago by ★ 5.2k • written 8.9 years ago by ▴ 60
0
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1
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2.1k
views
DiffBind: How to change the scatter plot colors?
diffbind
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by • 0
2
votes
2
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2.4k
views
Diffbind and dba.peakset vs dba.overlap
diffbind
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by • 0
3
votes
9
replies
4.9k
views
DiffBind BED output with score
diffbind differential binding analysis
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by ▴ 60
1
vote
1
reply
1.5k
views
DiffBind:issue when trying to read peaksets
diffbind
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by ▴ 40
2
votes
1
reply
1.3k
views
Dba.Peakset does not work
diffbind dba.peakset
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by ▴ 10
0
votes
2
replies
2.1k
views
Visualizing Normalization in DiffBind using MA: Differences between DESEQ2 / EdgeR & full v. effective library size
diffbind edger deseq2 chip-seq
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by • 0
0
votes
1
reply
845
views
Exporting differential peak sets, based on fold change and FDR
diffbind
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by ▴ 60
0
votes
1
reply
1.0k
views
Does dba object analysis indicate "score" in dba.count?
diffbind
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by ▴ 60
0
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1
reply
1.1k
views
DiffBind q value analysis
diffbind
updated 9.0 years ago by ▴ 670 • written 9.0 years ago by ▴ 60
1
vote
4
replies
2.9k
views
DiffBind for open chromatin mapping
diffbind dnaseseq atac-seq
9.0 years ago rbronste ▴ 60
0
votes
3
replies
2.0k
views
DiffBind EdgeR vs DeSeq2 diff peak counts
diffbind
9.0 years ago rbronste ▴ 60
0
votes
1
reply
2.2k
views
DiffBind - Difference in counting methodology when summits option in dba.count is on?
diffbind dba.count summits
updated 9.0 years ago by ★ 5.2k • written 9.2 years ago by • 0
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