Showing : diffBind • reset
0
votes
4
replies
2.5k
views
consensus analysis and dba.count function
diffbind consensus
9.0 years ago pabla86 • 0
0
votes
3
replies
2.8k
views
Clarification on Normalization Approach in DiffBind's db.analyze()
diffbind chip-seq normalization deseq2 tmm
updated 9.0 years ago by ★ 5.2k • written 9.0 years ago by • 0
1
vote
2
replies
2.2k
views
DiffBind score values differ between MACS2 xls file and DBA() table
diffbind score
9.0 years ago atisou • 0
1
vote
2
replies
1.6k
views
The descriptions of score methods in DiffBind
DiffBind dba.count score manual PDF
updated 9.1 years ago by ★ 5.2k • written 9.1 years ago by ▴ 20
1
vote
2
replies
1.6k
views
How can I set custom colors in DiffBind using dba.plotHeatmap
diffbind color
updated 9.1 years ago by ▴ 670 • written 9.1 years ago by ▴ 20
6
votes
6
replies
5.9k
views
DiffBind merging and consensus peaks
diffbind
updated 9.2 years ago by ▴ 670 • written 9.2 years ago by • 0
0
votes
1
reply
1.2k
views
DiffBind: Different results using edgeR or DeSeq2
diffbind
updated 9.2 years ago by ★ 5.2k • written 9.3 years ago by • 0
7
votes
6
replies
10k
views
Diffbind - What exactly is a "consensus" peak set?
peakset diffbind
updated 9.2 years ago by ▴ 670 • written 9.2 years ago by • 0
0
votes
1
reply
1.7k
views
can't find function "dba" in DiffBind
DiffBind dba package installation
9.2 years ago rebecca.spokony • 0
1
vote
16
replies
5.1k
views
Error: could not find function "dba"
software error diffbind dba
9.3 years ago • updated 9.2 years ago mmarins • 0
0
votes
1
reply
1.6k
views
DiffBind - dba.count - Reads overlapping multiple peaks question
diffbind
updated 9.2 years ago by ▴ 670 • written 9.3 years ago by • 0
1
vote
2
replies
1.3k
views
Providing specific regions to Diffbind
diffbind chipseq
updated 9.3 years ago by ★ 5.2k • written 9.3 years ago by • 0
0
votes
3
replies
3.5k
views
DiffBind cut off clarification
diffbind differential gene expression
updated 9.3 years ago by ▴ 670 • written 9.3 years ago by • 0
1
vote
3
replies
1.9k
views
DiffBind Error when dba.count on a pre-defined peak set
diffbind chipseq
updated 9.3 years ago by ★ 5.2k • written 9.3 years ago by ▴ 200
0
votes
2
replies
1.0k
views
DiffBind error while converting DBA object to SummarizedExperiment
DiffBind
updated 9.4 years ago by ★ 5.2k • written 9.4 years ago by • 0
0
votes
3
replies
2.4k
views
DiffBind installation error in R & Rstudio?
DiffBind
updated 9.4 years ago by ★ 5.2k • written 9.4 years ago by • 0
1
vote
2
replies
1.9k
views
DiffBind matrix of values
diffbind
updated 9.4 years ago by ★ 5.2k • written 9.4 years ago by ▴ 50
0
votes
1
reply
1.5k
views
DiffBind: Different results with different chromosome names
diffbind chip-seq
updated 9.4 years ago by ★ 5.2k • written 9.4 years ago by • 0
0
votes
3
replies
1.2k
views
How to change peaks in global matrix in DiffBind?
diffbind
updated 9.4 years ago by ★ 5.2k • written 9.5 years ago by • 0
2
votes
8
replies
2.0k
views
Difbind: output rows from binding heatmap plot
diffbind
updated 9.4 years ago by ★ 5.2k • written 9.4 years ago by • 0
0
votes
0
replies
1.0k
views
Diffbind: blocking factors in a contrast not including all samples (bug?)
diffbind batch effect
9.5 years ago Jon Manning ▴ 90
0
votes
3
replies
5.0k
views
DiffBind Analysis with more than 2 samples?
diffbind chip-seq
updated 9.5 years ago by ★ 5.2k • written 9.5 years ago by • 0
1
vote
2
replies
1.1k
views
About DiffBind dba.counts
DiffBind
updated 9.5 years ago by ★ 5.2k • written 9.5 years ago by ▴ 20
3
votes
5
replies
3.3k
views
Work with GRanges objects in DiffBind
diffbind
updated 9.5 years ago by ▴ 10 • written 10.5 years ago by • 0
2
votes
5
replies
2.9k
views
DiffBind: dba.report reports odd FDR values
diffbind
updated 9.5 years ago by ★ 5.2k • written 9.5 years ago by ▴ 10
3
votes
6
replies
4.9k
views
dba.count error in DiffBind
diffbind
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by ▴ 20
1
vote
6
replies
3.8k
views
Diffbind EdgeR and DESeq2 normalization
diffbind normalized counts
9.6 years ago GFM ▴ 20
3
votes
2
replies
3.1k
views
DiffBind "no lines available in input" error
diffbind chipseq
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by ▴ 50
0
votes
1
reply
2.5k
views
DiffBind TMM normalization
Rory Stark diffbind TMM edgeR chipseq
updated 9.6 years ago by ★ 5.2k • written 9.7 years ago by • 0
2
votes
1
reply
2.3k
views
DiffBind affinity vs occupancy Heatmaps
diffbind heatmap pearsoncorrelation
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by ▴ 10
0
votes
8
replies
2.2k
views
Regarding general understanding of DiffBind
diffbind heatmap
9.6 years ago shubhibartaria ▴ 10
0
votes
1
reply
1.6k
views
DiffBind: Consensus peak score ?
diffbind peak chipseq
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by • 0
2
votes
1
reply
2.7k
views
DiffBind dba.analyze() to return all differentially enriched peaks?
diffbind p-value differential binding analysis fold enrichment values using diffbind
updated 9.6 years ago by ★ 5.2k • written 9.6 years ago by • 0
1
vote
2
replies
1.3k
views
Testing for differential binding above a log2 fold change threshold using DiffBind
diffbind
updated 9.7 years ago by ★ 5.2k • written 9.7 years ago by ▴ 20
0
votes
3
replies
1.8k
views
DiffBind dba.count() seqfault
diffbind dba.count
9.7 years ago em540 • 0
0
votes
3
replies
2.0k
views
Error in Summary Factor using DiffBind
diffbind
updated 9.7 years ago by ▴ 670 • written 9.7 years ago by • 0
0
votes
8
replies
5.5k
views
DiffBind - Error in dba.count() when passing mask or peaks
diffbind
updated 9.8 years ago by • 0 • written 9.9 years ago by • 0
0
votes
3
replies
1.5k
views
Why Diffbind function dba.peakset gives 1
diffbind
9.8 years ago galib36 ▴ 10
0
votes
3
replies
1.8k
views
to call differential peaks among 4 peaksets all together using DiffBind
diffbind without replicate
updated 9.9 years ago by ▴ 670 • written 9.9 years ago by • 0
1
vote
2
replies
2.3k
views
some help with DiffBind
diffbind
updated 9.9 years ago by ▴ 670 • written 9.9 years ago by • 0
1
vote
2
replies
2.9k
views
Diffbind - retrieving individual sample RPKM values for differentially bound sites
diffbind
updated 9.9 years ago by ★ 5.2k • written 10.1 years ago by ▴ 10
1
vote
1
reply
2.3k
views
blocking factors in diffbind for edgeR and DESeq2 analysis
diffbind
updated 9.9 years ago by ★ 5.2k • written 10.0 years ago by • 0
0
votes
2
replies
1.6k
views
DiffBind: same numbers in dba.overlap
diffbind dba.overlap
10.0 years ago • updated 9.9 years ago Udi Landau ▴ 30
0
votes
1
reply
921
views
DiffBind with 21 contrast???
diffbind
updated 9.9 years ago by ★ 5.2k • written 9.9 years ago by • 0
3
votes
5
replies
2.4k
views
How to use DiffBind to get consensus peaks I am interested in?
DiffBind
updated 9.9 years ago by ★ 5.2k • written 9.9 years ago by ▴ 20
1
vote
3
replies
1.7k
views
question about correlation plots generated by Diffbind based on peak occupancy
diffbind
updated 10.0 years ago by ▴ 30 • written 10.0 years ago by • 0
4
votes
8
replies
3.0k
views
ChIPQC and/or Diffbind - retrieving normalized read counts for peaks from single sample
DiffBind ChIPQC
10.0 years ago JD ▴ 10
0
votes
2
replies
2.3k
views
Diffbind plotting on contrasts
diffbind chip-seq
updated 10.0 years ago by ▴ 110 • written 11.0 years ago by • 0
0
votes
0
replies
3.0k
views
Error in DiffBind input
diffbind
10.0 years ago GFM ▴ 20
0
votes
1
reply
1.5k
views
Question about X and Y chromosomes in Diffbind and how they are handled.
diffbind
updated 10.0 years ago by ▴ 670 • written 10.0 years ago by • 0
679 results • Page 11 of 14
Recent ...
Replies
Comment: msmsTests, inconsistent sign between lFC.Av and LogFC by Ben • 0
Continued here due to posting difficulties: Extract from the results table: ``` Inhibitor Vehicle lFC.Av LogFC ... F1 0.0 27…
Answer: DESeq2 for 16S rRNA Analysis by James W. MacDonald 68k
The Wald test is only meant for comparison of two groups at a time, so it depends on what you mean by 'analyze across multiple groups at a …
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by varying.mastodon.isyn • 0
Oh, that error! I remember wrestling with that one for hours when I was first learning Python. Turns out I was trying to use a list itself …
Comment: Confirm that OpenStats will not be archived (pryr dependency) by Marina • 0
Thank you!
Comment: AnnotationForge makeOrgPackage rsqlite_send_query error by ansley.r.burtch • 0
Hi! I am sure you are well into your career now and haven't worked on this for a while, but I wanted to let you know this is still helping …
Votes
A: DESeq2 - VST eliminates zero values
Comment: Normalise to a housekeeping gene in DESEq2
Comment: limpa analysis advice
C: AnnotationForge makeOrgPackage rsqlite_send_query error
Answer: Limpa Pipeline Order
Awards • All
Popular Question to rcavalca ▴ 140
Popular Question to James W. MacDonald 68k
Popular Question to James Aiden • 0
Popular Question to shepherl 4.3k
Popular Question to fl ▴ 20
Locations • All
Germany, 8 minutes ago
United States, 48 minutes ago
Poland, 1 hour ago
WEHI, Melbourne, Australia, 1 hour ago
United States, 1 hour ago
Traffic: 1183 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6