Showing : edgeR • reset
0
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3
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4.0k
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CPM output from edgeR for a downstream application
CPM edgeR
10.5 years ago ycding ▴ 20
6
votes
4
replies
16k
views
EdgeR Design matrix not of full rank
edger
updated 10.5 years ago by 53k • written 10.5 years ago by • 0
5
votes
3
replies
3.1k
views
edgeR: annotation and isoform analysis alternatives
edgeR ruvseq rnaseq isoforms
10.5 years ago sergio.espeso-gil • 0
2
votes
18
replies
4.2k
views
edgeR: processAmplicons crashes with large number of hairpins
edger processamplicons rstudio
updated 10.5 years ago by ★ 29k • written 10.5 years ago by • 0
3
votes
3
replies
2.2k
views
lfc in Limma topTable
limma edger
10.5 years ago jkradke • 0
3
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1
reply
1.9k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger anova
updated 10.5 years ago by ★ 29k • written 10.5 years ago by • 0
0
votes
1
reply
969
views
Find differentially expressed values
differential gene expression differential expression edgeR
updated 10.5 years ago by 53k • written 10.5 years ago by • 0
1
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8
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4.3k
views
Intepretation of RUVseq/edgeR logFC
RUVseq logFC edgeR
10.6 years ago Marie • 0
2
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2
replies
6.6k
views
What are logCPM values in the Differentially Expressed Genes output
edgeR
10.6 years ago candida.vaz ▴ 50
2
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3
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2.6k
views
EdgeR design problem (genotype+treatment+time)
edger
10.6 years ago melissawong • 0
3
votes
3
replies
1.8k
views
edgeR: effect of adding background reads
edger
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 100
1
vote
13
replies
2.4k
views
edgeR data analysis question
edger limma
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 10
3
votes
6
replies
1.5k
views
Possible bug at DiffBind-edgeR interface
DiffBind edgeR
updated 10.6 years ago by ★ 5.2k • written 10.6 years ago by ★ 29k
1
vote
1
reply
1.0k
views
edgeR complex nested experiment
edgeR
updated 10.6 years ago by ★ 29k • written 10.6 years ago by • 0
3
votes
4
replies
3.5k
views
RNAseq analysis using edgeR - specifying and testing full factorial 2x2x4 model, main effects and interactions.
edger multiple factor design interactions
updated 10.6 years ago by ★ 29k • written 10.6 years ago by • 0
4
votes
4
replies
3.9k
views
diffbind_dba.count(), error on read in bam file
edger
10.6 years ago yijing.su • 0
2
votes
5
replies
4.7k
views
design model matrix for nested factors (edgeR)
edger design matrix model matrix
updated 10.6 years ago by ★ 29k • written 10.6 years ago by • 0
4
votes
8
replies
3.4k
views
Can't find any differentially expressed genes
rnaseq differential gene expression design matrix edgeR
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 10
4
votes
1
reply
2.8k
views
Get source code for rpkm() function in edgeR
edgeR rpkm source code
updated 10.6 years ago by 25k • written 10.6 years ago by ▴ 10
7
votes
4
replies
3.3k
views
Gene expression between two copies of same gene:use counts or RPKM or FPKM?
count rnaseq rpkm fpkm edgeR
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 10
8
votes
4
replies
2.1k
views
Equivalence tests with edgeR
rnaseq edger equivalence
updated 10.6 years ago by ★ 29k • written 10.6 years ago by ▴ 20
2
votes
7
replies
3.2k
views
Different filters with edgeR
edger filtering
10.7 years ago cpcantalapiedra • 0
2
votes
2
replies
3.9k
views
Down/Up-regulated genes asymmetry in edgeR differential expression analysis
edgeR rnaseq
10.7 years ago Pauly Lin ▴ 160
3
votes
8
replies
4.8k
views
(not) Understanding EdgeR coefficients
edger
updated 10.7 years ago by 53k • written 10.7 years ago by • 0
13
votes
20
replies
15k
views
Can I feed TCGA normalized count data to EdgeR for differential gene expression analysis
EdgeR TCGA normalized count
updated 10.7 years ago by ▴ 130 • written 10.7 years ago by ▴ 20
5
votes
11
replies
2.7k
views
edgeR Multifactor Design - Baseline
edgeR multiple factor design
updated 10.7 years ago by 53k • written 10.7 years ago by • 0
0
votes
3
replies
4.2k
views
Proportion of variance explained from edgeR MDS
edgeR
updated 10.7 years ago by 53k • written 12.5 years ago by ▴ 110
1
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2
replies
1.8k
views
Same number of topTags reported for different contrasts
edger topTags design and contrast matrix
updated 10.7 years ago by 53k • written 10.7 years ago by • 0
3
votes
4
replies
4.1k
views
Queries regarding normalization methods for RNA sequencing data analysis
edger
10.7 years ago ash29pathak • 0
5
votes
7
replies
4.7k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 10.7 years ago by 68k • written 10.7 years ago by • 0
4
votes
4
replies
2.6k
views
treatDGE vs glmLRT
edger
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 10
1
vote
3
replies
3.3k
views
edgeR for DEG between two groups
edgeR
10.7 years ago zhouxiuqing • 0
2
votes
3
replies
2.0k
views
Need advice on normalization of SMART-amplified RNA-Seq data
normalization rna-seq deseq2 edger smart
updated 10.7 years ago by ★ 7.9k • written 10.7 years ago by ▴ 270
7
votes
10
replies
6.4k
views
Time course RNA-Seq using edgeR
edger
updated 10.7 years ago by 53k • written 10.7 years ago by • 0
0
votes
2
replies
1.8k
views
camera.DGEList causes Error in qr.qty(QR, t(y)) : NA/NaN/Inf in foreign function call
edgeR
updated 10.7 years ago by ★ 29k • written 10.7 years ago by ▴ 830
18
votes
17
replies
5.5k
views
How to model a comparison between comparisons in edgeR?
edger rnaseq
updated 10.7 years ago by ★ 7.9k • written 10.7 years ago by ▴ 60
4
votes
8
replies
4.6k
views
Visualising effects of observation/sample weights in differential expression analysis
limma voom sva edgeR
updated 10.7 years ago by ▴ 1000 • written 10.8 years ago by ▴ 20
5
votes
6
replies
2.2k
views
Cannot find function treatDGE() in package edgeR?
edger installation
updated 10.7 years ago by 68k • written 10.7 years ago by • 0
10
votes
10
replies
8.2k
views
GLM Likelihood ratio test
rnaseq edgeR GLM
updated 10.7 years ago by 53k • written 10.7 years ago by • 0
1
vote
1
reply
2.9k
views
EdgeR:Calculating differential expression within/between groups in nested designs
edger nested design matrix differential expression
updated 10.8 years ago by ★ 29k • written 10.8 years ago by • 0
0
votes
5
replies
3.2k
views
count tables created with easyRNASeq and the rpkm() function from edgeR
easyrnaseq edger rpkm
updated 10.8 years ago by ▴ 320 • written 10.8 years ago by ▴ 80
3
votes
12
replies
27k
views
P Value of 0?
differential gene expression edger
updated 10.8 years ago by ▴ 180 • written 10.8 years ago by • 0
2
votes
5
replies
1.1k
views
Can I use the dispersion estimated using other methods in replacement of that computed by edgeR?
edger
updated 10.8 years ago by ★ 29k • written 10.8 years ago by ▴ 20
1
vote
4
replies
22k
views
edgeR: non-unique values when setting 'row.names' - but the row names are unique!!!
edgeR row.names DGEList
10.8 years ago ccheung • 0
1
vote
8
replies
3.8k
views
RNA-seq bacterial transcriptome analysis in EdgeR with unusual dispersion trend
RNA-seq edgeR estimatedispersions bacteria
10.8 years ago Mauve • 0
4
votes
7
replies
16k
views
package ‘edgeR’ is not available (for R version 3.1.2)
edgeR packages
10.8 years ago Patrick Schorderet ▴ 20
2
votes
5
replies
2.8k
views
RNA-Seq analysis edgeR
edgeR rna-seq replicates
updated 10.8 years ago by 68k • written 10.8 years ago by • 0
4
votes
5
replies
2.4k
views
edgeR: estimating dispersion for nested designs
edger nested estimatedispersions
10.8 years ago Mauve • 0
4
votes
4
replies
23k
views
edgeR rpkm function
edger rpkm
updated 2.7 years ago by 53k • written 10.8 years ago by ▴ 30
2
votes
8
replies
4.5k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger ANOVA Design matrix
updated 10.8 years ago by 53k • written 10.8 years ago by • 0
2,031 results • Page 28 of 41
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Answer: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Post translational modifications and phosphoproteomics in limpa?
Answer: Post translational modifications and phosphoproteomics in limpa?
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