Showing : enrichplot • reset
5
votes
13
replies
4.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
2
votes
6
replies
6.3k
views
color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
3.3 years ago Emilia ▴ 30
2
votes
6
replies
978
views
Looking for documentation about the use of "split = .sign" in enrichplot's dotplot
enrichplot
3 months ago • updated 9 weeks ago Tobias • 0
0
votes
5
replies
1.0k
views
plot enrichment results
enrichplot clusterProfiler
updated 9 months ago by ▴ 730 • written 10 months ago by • 0
0
votes
5
replies
2.0k
views
How can I limit the number of displayed genes in heatplot
heatplot enrichplot
updated 7 months ago by • 0 • written 16 months ago by • 0
8
votes
5
replies
4.0k
views
Using the plotting functions of clusterProfiler / enrichplot with enrichment results from other programs
clusterProfiler enrichplot
5.0 years ago • updated 23 months ago charles.foster ▴ 160
3
votes
5
replies
3.1k
views
how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 20 months ago by ★ 1.2k • written 23 months ago by ▴ 30
2
votes
4
replies
2.1k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
updated 4.3 years ago by 65k • written 4.3 years ago by ▴ 30
2
votes
4
replies
2.6k
views
enrichDGN result can't be visualised by barplot
enrichplot
2.6 years ago Pahi ▴ 10
2
votes
4
replies
1.5k
views
Change dotsize to be the same in multiple plots - enrichplot dotplot
enrichplot clusterProfiler
11 months ago Tyroone • 0
1
vote
4
replies
3.9k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 2.1 years ago by • 0 • written 2.8 years ago by • 0
2
votes
3
replies
2.2k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 19 months ago by ▴ 120 • written 19 months ago by ▴ 10
1
vote
3
replies
5.4k
views
GSVA and ssGSEA output differences
enrichment GSVA enrichplot ssGSEA
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by • 0
0
votes
3
replies
3.6k
views
Unable to generate a dotplot to view the enrichment analysis results (clusterProfiler/ enrichplot)
clusterProfiler enrichplot clusterpro doseR dose
updated 21 months ago by ★ 3.9k • written 22 months ago by ▴ 10
0
votes
3
replies
1.3k
views
gseaplot2 from enrichplot for gene set enrichment analysis comparing two datasets
enrichplot GSEA clusterProfiler
updated 6 months ago by • 0 • written 8 months ago by • 0
0
votes
2
replies
1.4k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
2.5 years ago Adarsh • 0
2
votes
2
replies
245
views
padj-based gradient scale from barplot (clusterProfiler results) does not work properly
enrichplot barplot clusterProfiler
5 weeks ago Eva ▴ 10
0
votes
2
replies
592
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 6 months ago by 65k • written 6 months ago by • 0
2
votes
1
reply
698
views
Parsing geoms to enrichplot
enrichplot
3.7 years ago Francois Marchildon ▴ 20
0
votes
1
reply
237
views
visualizing GSEA showCategory question
enrichplot
updated 3 months ago by 65k • written 3 months ago by • 0
1
vote
1
reply
1.4k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
2.4 years ago fatimaruizdelabastida • 0
0
votes
1
reply
1.0k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 10
0
votes
1
reply
2.0k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 4.2 years ago by ★ 3.9k • written 4.2 years ago by • 0
0
votes
1
reply
1.3k
views
convert regular data matrix or data frame to enrichResult object for bioconductor package enrichplot
enrichplot
updated 2.4 years ago by • 0 • written 2.4 years ago by ▴ 10
0
votes
1
reply
1.5k
views
Treeplot by enrichplot
clusterProfiler enrichplot treeplot
updated 18 months ago by ★ 1.2k • written 19 months ago by • 0
0
votes
1
reply
137
views
compareCluster dotplot: how to modify the genesets order
DOSE enrichplot clusterProfiler
updated 12 days ago by ★ 3.9k • written 16 days ago by • 0
0
votes
1
reply
654
views
Libraries loading error
DESeq2 clusterProfiler enrichplot
updated 15 months ago by 41k • written 15 months ago by • 0
0
votes
1
reply
972
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 22 months ago by ★ 3.9k • written 22 months ago by ▴ 10
0
votes
1
reply
1.2k
views
Am I able to add gene names/symbols to an enrichGO() output?
clusterProfiler enrichplot
updated 13 months ago by ★ 3.9k • written 13 months ago by • 0
0
votes
1
reply
1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 3.3 years ago by ▴ 30 • written 3.4 years ago by • 0
0
votes
0
replies
1.3k
views
EnrichGO
R enrichplot
updated 2.7 years ago by ★ 3.9k • written 2.7 years ago by • 0
0
votes
0
replies
1.1k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
5.2 years ago yurigorelik ▴ 10
0
votes
0
replies
949
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
4.0 years ago jan.soderman • 0
0
votes
0
replies
1.5k
views
Moving around nodes using emapplot {enrichplot} or enrichMap {DOSE}
enrichment map emapplot enrichplot enrichMap DOSE
5.9 years ago jan.soderman • 0
0
votes
0
replies
347
views
HeatPlot - Genes selections
enrichplot stringr heatplot
7 months ago ruba-mahmoud • 0
35 results • Page 1 of 1
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Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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