Showing : flowCore • reset
0
votes
0
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355
views
How to fix fix $PnR in flowCore
flowCore
updated 7 months ago by 67k • written 7 months ago by • 0
1
vote
1
reply
568
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 9 months ago by ▴ 360 • written 10 months ago by ▴ 30
0
votes
0
replies
526
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
12 months ago info ▴ 10
0
votes
6
replies
1.6k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 12 months ago by ▴ 360 • written 12 months ago by • 0
1
vote
1
reply
619
views
How to read fcs3.2 files
flowCore
updated 13 months ago by 67k • written 13 months ago by ▴ 10
0
votes
2
replies
683
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
14 months ago mrescan • 0
0
votes
0
replies
599
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
17 months ago aguirre ▴ 20
0
votes
2
replies
743
views
Unable to access Git links.
Source flowCore Repository git
updated 20 months ago by 4.1k • written 20 months ago by • 0
0
votes
0
replies
601
views
Merging 2 staining panels
FlowCytometry flowCore
22 months ago michaela.gregorova13 • 0
0
votes
0
replies
763
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
23 months ago pawel.malecki • 0
2
votes
1
reply
1.3k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.1 years ago aguirre ▴ 20
0
votes
0
replies
732
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.2 years ago Dennis.hinkel • 0
2
votes
9
replies
2.2k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.3 years ago by ▴ 360 • written 2.3 years ago by • 0
0
votes
0
replies
998
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
2.8 years ago hamiltond ▴ 10
0
votes
0
replies
1.3k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
2.8 years ago hamiltond ▴ 10
0
votes
0
replies
899
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.8 years ago nmchavez • 0
0
votes
0
replies
801
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
2.8 years ago nmchavez • 0
0
votes
0
replies
744
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
3.0 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.1k
views
Difference in output of logicle transform in different languages
flowCore
updated 2.8 years ago by • 0 • written 3.1 years ago by ▴ 20
0
votes
0
replies
868
views
Job: Bioconductor developer
FlowCytometry flowCore
3.1 years ago markkelly1983 ▴ 20
0
votes
1
reply
835
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.2 years ago Rainer • 0
0
votes
1
reply
1.1k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 3.3 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
1
reply
1.8k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.3 years ago by ★ 1.3k • written 3.7 years ago by • 0
0
votes
1
reply
1.5k
views
Re-naming $PnS parameters
flowCore
updated 3.8 years ago by ▴ 360 • written 3.8 years ago by • 0
2
votes
3
replies
1.3k
views
Getting number of datasets with flowCore
flowCore
updated 3.8 years ago by ▴ 360 • written 3.8 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 3.9 years ago by ▴ 360 • written 3.9 years ago by • 0
0
votes
0
replies
818
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.1 years ago GFM ▴ 20
1
vote
6
replies
1.7k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.2 years ago by ▴ 360 • written 4.2 years ago by • 0
0
votes
8
replies
2.1k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 15 months ago by • 0 • written 4.2 years ago by ▴ 30
3
votes
10
replies
2.9k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.6 years ago by ▴ 360 • written 4.7 years ago by ▴ 30
0
votes
1
reply
885
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.7 years ago by ▴ 310 • written 4.8 years ago by • 0
2
votes
2
replies
1.9k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.7 years ago by ▴ 310 • written 4.7 years ago by ▴ 30
4
votes
5
replies
1.5k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.7 years ago by ▴ 310 • written 4.7 years ago by • 0
0
votes
0
replies
753
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
4.8 years ago palffy.karoly • 0
0
votes
2
replies
1.2k
views
flowCore not displaying FL gates
flowCore
updated 5.0 years ago by ★ 1.3k • written 5.0 years ago by • 0
2
votes
4
replies
1.4k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.1 years ago chandra.swarnendu • 0
0
votes
1
reply
2.1k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 10
1
vote
3
replies
1.5k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.3 years ago cahyasu88 • 0
1
vote
0
replies
1.1k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
5.4 years ago nina.hahn • 0
3
votes
2
replies
1.2k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.4 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.3k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
5.4 years ago rdlr • 0
0
votes
1
reply
914
views
Issue creating transformed filter in flowCore
flowCore
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by • 0
4
votes
4
replies
1.6k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by ▴ 90
3
votes
1
reply
2.4k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by • 0
2
votes
3
replies
2.1k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by • 0
1
vote
4
replies
2.0k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.6 years ago by ▴ 310 • written 5.6 years ago by ▴ 70
0
votes
0
replies
897
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.7 years ago kovacik • 0
1
vote
5
replies
2.1k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.8 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1.2k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 5.8 years ago by ★ 1.3k • written 5.8 years ago by ▴ 10
1
vote
6
replies
2.7k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 5.8 years ago by ▴ 360 • written 5.8 years ago by • 0
50 results • Page 1 of 1
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Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0
Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
Here, estimateGLMRobustDisp() was used just to get the diagnostic BCV plot by plotBCV(y). The robust NB dispersions were not used for the D…
Answer: Please, I desperately need help with DESeq2. Three groups of repeated measures w by Michael Love 43k
I have to reserve my time on the support site for software related questions. I recommend working with a local statistician or someone fami…
Answer: Is it possible to work with DESeq2 where data is not properly matched for sex a by Michael Love 43k
I would probably just do the M vs M analysis. You could instead include a term for sex and have a model with all 45 samples, but the M vs M…
Votes
Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
C: How does edgeR cpm function calculate log(CPM) values?
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