Showing : flowCore • reset
0
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325
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How to fix fix $PnR in flowCore
flowCore
updated 6 months ago by 67k • written 6 months ago by • 0
1
vote
1
reply
539
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 8 months ago by ▴ 360 • written 9 months ago by ▴ 30
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0
replies
493
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
10 months ago info ▴ 10
0
votes
6
replies
1.5k
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 11 months ago by ▴ 360 • written 11 months ago by • 0
1
vote
1
reply
601
views
How to read fcs3.2 files
flowCore
updated 12 months ago by 67k • written 12 months ago by ▴ 10
0
votes
2
replies
662
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
13 months ago mrescan • 0
0
votes
0
replies
582
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
16 months ago aguirre ▴ 20
0
votes
2
replies
724
views
Unable to access Git links.
Source flowCore Repository git
updated 19 months ago by 4.1k • written 19 months ago by • 0
0
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0
replies
576
views
Merging 2 staining panels
FlowCytometry flowCore
21 months ago michaela.gregorova13 • 0
0
votes
0
replies
720
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
22 months ago pawel.malecki • 0
2
votes
1
reply
1.2k
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
2.0 years ago aguirre ▴ 20
0
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0
replies
712
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
2.1 years ago Dennis.hinkel • 0
2
votes
9
replies
2.1k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 2.2 years ago by ▴ 360 • written 2.2 years ago by • 0
0
votes
0
replies
971
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
2.7 years ago hamiltond ▴ 10
0
votes
0
replies
1.3k
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
2.7 years ago hamiltond ▴ 10
0
votes
0
replies
885
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.7 years ago nmchavez • 0
0
votes
0
replies
780
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
2.7 years ago nmchavez • 0
0
votes
0
replies
720
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
2.9 years ago markkelly1983 ▴ 20
2
votes
1
reply
1.1k
views
Difference in output of logicle transform in different languages
flowCore
updated 2.7 years ago by • 0 • written 3.0 years ago by ▴ 20
0
votes
0
replies
856
views
Job: Bioconductor developer
FlowCytometry flowCore
3.0 years ago markkelly1983 ▴ 20
0
votes
1
reply
820
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
3.1 years ago Rainer • 0
0
votes
1
reply
1.1k
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 3.2 years ago by ★ 1.3k • written 3.6 years ago by • 0
0
votes
1
reply
1.8k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 3.2 years ago by ★ 1.3k • written 3.6 years ago by • 0
0
votes
1
reply
1.4k
views
Re-naming $PnS parameters
flowCore
updated 3.7 years ago by ▴ 360 • written 3.7 years ago by • 0
2
votes
3
replies
1.2k
views
Getting number of datasets with flowCore
flowCore
updated 3.7 years ago by ▴ 360 • written 3.7 years ago by ▴ 10
1
vote
1
reply
1.8k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 3.8 years ago by ▴ 360 • written 3.8 years ago by • 0
0
votes
0
replies
798
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
4.0 years ago GFM ▴ 20
1
vote
6
replies
1.6k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 4.1 years ago by ▴ 360 • written 4.1 years ago by • 0
0
votes
8
replies
2.1k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 14 months ago by • 0 • written 4.1 years ago by ▴ 30
3
votes
10
replies
2.9k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 2.5 years ago by ▴ 360 • written 4.6 years ago by ▴ 30
0
votes
1
reply
866
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.6 years ago by ▴ 310 • written 4.7 years ago by • 0
2
votes
2
replies
1.9k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.6 years ago by ▴ 310 • written 4.6 years ago by ▴ 30
4
votes
5
replies
1.4k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.7 years ago by ▴ 310 • written 4.7 years ago by • 0
0
votes
0
replies
734
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
4.8 years ago palffy.karoly • 0
0
votes
2
replies
1.2k
views
flowCore not displaying FL gates
flowCore
updated 4.9 years ago by ★ 1.3k • written 4.9 years ago by • 0
2
votes
4
replies
1.4k
views
Mathematical operations in FCS file
flowCore flow cytometry
5.0 years ago chandra.swarnendu • 0
0
votes
1
reply
2.1k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 5.1 years ago by ★ 1.3k • written 5.1 years ago by ▴ 10
1
vote
3
replies
1.4k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
5.2 years ago cahyasu88 • 0
1
vote
0
replies
1.1k
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
5.3 years ago nina.hahn • 0
3
votes
2
replies
1.2k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
5.3 years ago Brent.OCarrigan • 0
1
vote
2
replies
2.2k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
5.4 years ago rdlr • 0
0
votes
1
reply
901
views
Issue creating transformed filter in flowCore
flowCore
updated 5.4 years ago by ▴ 310 • written 5.4 years ago by • 0
4
votes
4
replies
1.6k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by ▴ 90
3
votes
1
reply
2.3k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by • 0
2
votes
3
replies
2.1k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by • 0
1
vote
4
replies
2.0k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by ▴ 70
0
votes
0
replies
883
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.7 years ago kovacik • 0
1
vote
5
replies
2.1k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.7 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
1.1k
views
gatingML examples needed
flowCore flowUtils gatingML
updated 5.7 years ago by ★ 1.3k • written 5.7 years ago by ▴ 10
1
vote
6
replies
2.7k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 5.7 years ago by ▴ 360 • written 5.7 years ago by • 0
50 results • Page 1 of 1
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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable by dtzhu337 • 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0
> dim(spe) [1] 19962 425
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Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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