Showing : flowCore • reset
1
vote
1
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258
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 5 weeks ago by ▴ 350 • written 10 weeks ago by ▴ 30
0
votes
0
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112
views
Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
6 weeks ago taylor.witte • 0
0
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0
replies
221
views
News: Online course - Flow cytometry data analysis with R/Bioconductor
flowDensity flowCore
3 months ago info ▴ 10
0
votes
6
replies
901
views
flowCore >2.0 read.FCS results in $SPILLOVER error when reading certain FCS files (could it be a warning?)
read.FCS flowCore
updated 4 months ago by ▴ 350 • written 4 months ago by • 0
1
vote
1
reply
376
views
How to read fcs3.2 files
flowCore
updated 4 months ago by 65k • written 4 months ago by ▴ 10
0
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2
replies
428
views
Cannot open Sysmex Partec CUbe 6 .fcs with read.FCS
Partec read.FCS flowCore
5 months ago mrescan • 0
0
votes
8
replies
1.7k
views
flowset/ncdfFlowset replace keywords doesn't work right
ncdfFlow flowCore
updated 7 months ago by • 0 • written 3.6 years ago by ▴ 30
0
votes
0
replies
378
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
9 months ago aguirre ▴ 20
0
votes
2
replies
502
views
Unable to access Git links.
Source flowCore Repository git
updated 12 months ago by 3.9k • written 12 months ago by • 0
0
votes
0
replies
351
views
Merging 2 staining panels
FlowCytometry flowCore
14 months ago michaela.gregorova13 • 0
0
votes
0
replies
491
views
write.FCS() produces files which cannot be opened by CytExpert software
flowCore
15 months ago • updated 14 months ago pawel.malecki • 0
2
votes
1
reply
894
views
How to modify a compensation matrix in an fcs file
flowCore FlowCytometry
17 months ago aguirre ▴ 20
0
votes
0
replies
550
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
18 months ago Dennis.hinkel • 0
2
votes
9
replies
1.5k
views
Error when plotting flow cytometry data
FlowCytometry flowCore ggcyto
updated 19 months ago by ▴ 350 • written 19 months ago by • 0
3
votes
10
replies
2.3k
views
Reading multiple data segments from FCS 3.0 file
flowCore flow cytometry FCS 3.0 ncdfFlowSet
updated 23 months ago by ▴ 350 • written 4.0 years ago by ▴ 30
0
votes
0
replies
735
views
Error in the use of flowTrans: L-BFGS-B needs finite values of 'fn'
flowCore FlowCytometryData flowTrans flow
2.1 years ago hamiltond ▴ 10
0
votes
0
replies
907
views
FIXED: Using read.flowSet, getting a "no matching files found" error
flowCore FlowCytometryData
2.1 years ago hamiltond ▴ 10
0
votes
0
replies
718
views
Does flowCore::spillover() produce a spillover matrix or a compensation matrix?
flowCore
2.1 years ago nmchavez • 0
0
votes
0
replies
597
views
flowDensity Unable to find inherited method when given a flowFrame Object
flowCore flowDensity
2.1 years ago nmchavez • 0
2
votes
1
reply
870
views
Difference in output of logicle transform in different languages
flowCore
updated 2.1 years ago by • 0 • written 2.4 years ago by ▴ 20
0
votes
0
replies
548
views
Reducing/sampling number of FCS events
FlowCytometry flowCore
2.3 years ago markkelly1983 ▴ 20
0
votes
0
replies
695
views
Job: Bioconductor developer
FlowCytometry flowCore
2.4 years ago markkelly1983 ▴ 20
0
votes
1
reply
690
views
Error in flowCore::read.FCS(): Error in uint2double(splitted, endian == "big") : vector
read.FCS flowCore
2.5 years ago Rainer • 0
0
votes
1
reply
854
views
Undefined columns error R cytometry analysis
flowCore ggcyto FlowCytometryData
updated 2.6 years ago by ★ 1.3k • written 3.0 years ago by • 0
0
votes
1
reply
1.5k
views
how to get MFI stats from data
flowCore flowStats flowUtils flowWorkspace
updated 2.6 years ago by ★ 1.3k • written 3.0 years ago by • 0
0
votes
1
reply
1.1k
views
Re-naming $PnS parameters
flowCore
updated 3.1 years ago by ▴ 350 • written 3.1 years ago by • 0
2
votes
3
replies
991
views
Getting number of datasets with flowCore
flowCore
updated 3.2 years ago by ▴ 350 • written 3.2 years ago by ▴ 10
1
vote
1
reply
1.3k
views
Error when using read.FCS
compensation flowCore FlowCore read.FCS
updated 3.2 years ago by ▴ 350 • written 3.2 years ago by • 0
0
votes
0
replies
660
views
flowCore - linear transformation
cytofWorkflow cytofworkflow flowCore
3.5 years ago GFM ▴ 20
1
vote
6
replies
1.3k
views
read.flowSet() raises " Argument 'phenoData' must be of type 'AnnotatedDataFrame'" error
flowCore
updated 3.5 years ago by ▴ 350 • written 3.5 years ago by • 0
0
votes
1
reply
688
views
FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.0 years ago by ▴ 310 • written 4.1 years ago by • 0
2
votes
2
replies
1.5k
views
Passing truncate_max_range=FALSE to read.ncdfFlowSet
ncdfFlow flowCore ncdfFlowSet read.FCS
updated 4.0 years ago by ▴ 310 • written 4.0 years ago by ▴ 30
4
votes
5
replies
1.1k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.1 years ago by ▴ 310 • written 4.1 years ago by • 0
0
votes
0
replies
579
views
Strange problem with parameter range when creating a flowFPModel
flowCore flowFP flowFPModel
4.2 years ago palffy.karoly • 0
0
votes
2
replies
920
views
flowCore not displaying FL gates
flowCore
updated 4.3 years ago by ★ 1.3k • written 4.3 years ago by • 0
2
votes
4
replies
1.1k
views
Mathematical operations in FCS file
flowCore flow cytometry
4.4 years ago chandra.swarnendu • 0
0
votes
1
reply
1.7k
views
Reproducing FlowJo Biexponential Transform in flowCore
flowCore
updated 4.5 years ago by ★ 1.3k • written 4.5 years ago by ▴ 10
1
vote
3
replies
1.2k
views
flowcore:::read.FCS does not read FCS3.1 correctly
flowcore
4.6 years ago cahyasu88 • 0
1
vote
0
replies
855
views
Cell cycle analysis subG1
flowploidy apoptosis cell cycle flowCore
4.7 years ago nina.hahn • 0
3
votes
2
replies
1.0k
views
flowWorkspace cannot load external data
flowWorkspace external data flowCore
4.8 years ago Brent.OCarrigan • 0
1
vote
2
replies
1.8k
views
flowCore issue: creating and applying new compensation matrix
compensate() flowCore
4.8 years ago rdlr • 0
0
votes
1
reply
744
views
Issue creating transformed filter in flowCore
flowCore
updated 4.8 years ago by ▴ 310 • written 4.8 years ago by • 0
4
votes
4
replies
1.3k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by ▴ 80
3
votes
1
reply
2.0k
views
Convert Flowframe to matrix
flowcore fcs flow cytommetry matrix conversion
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by • 0
2
votes
3
replies
1.7k
views
how to use the flowCore spillover function
flowCore spillover gatingset2FlowJO
updated 4.9 years ago by ▴ 310 • written 4.9 years ago by • 0
1
vote
4
replies
1.6k
views
flowCore install missing a dependency?
flowCore Installation dependency
updated 5.0 years ago by ▴ 310 • written 5.0 years ago by ▴ 70
0
votes
0
replies
735
views
flowPloidy: how to visualize data on logarythmic x axis
flowPloidy flowcore flow cytometry
5.1 years ago kovacik • 0
1
vote
5
replies
1.7k
views
Flow cytometry optimization of transformation parameters
flow Cytometry flowCore flowTrans
5.1 years ago carlos.x.martinez-fleites • 0
1
vote
2
replies
964
views
gatingML examples needed
flowCore flowUtils gatingML
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 10
1
vote
6
replies
2.3k
views
flowCore: uneven number of tokens / The last keyword is dropped.
flowCore
updated 5.2 years ago by ▴ 350 • written 5.2 years ago by • 0
50 results • Page 1 of 1
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Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
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Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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