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Showing :
genesetenrichment
•
reset
1
vote
2
replies
130
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
16 days ago
Ana
• 0
0
votes
2
replies
179
views
How to make GSEAplot with chip set
geneset
GeneSetEnrichment
msigdb
4 weeks ago
Seongsu
• 0
4
votes
4
replies
3.7k
views
Function simplify fails when argument ont is set to "ALL" in enrichGO function in package clusterProfiler
clusterProfiler
GO
GO enrichment
genesetenrichment
updated 6 weeks ago by
jandrade
• 0 • written 6.4 years ago by
Huang, Lei [BSD] - CRI
▴ 20
0
votes
0
replies
330
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData
GeneSetEnrichment
multiGSEA
9 months ago
sonal
• 0
0
votes
1
reply
803
views
How to Load a Molecular Signature Database into clusterProfiler gseGO?
gseGO
GeneSet
clusterProfiler
GeneSetEnrichment
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
manuelsokolov
• 0
0
votes
2
replies
3.3k
views
What is the significance of "Zero Cross" in Ranked List Metric in Gene Set Enrichment Analysis ?
GSEA
GeneSetEnrichment
22 months ago
Bhavana
• 0
0
votes
1
reply
875
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 22 months ago by
Basti
▴ 780 • written 22 months ago by
Noy
• 0
9
votes
13
replies
6.5k
views
GSEA many significant gene sets despite no differentially expressed genes
GSEA
GeneSetEnrichment
DifferentialExpression
updated 12 weeks ago by
ATpoint
★ 4.1k • written 2.1 years ago by
nhaus
▴ 30
1
vote
0
replies
1.3k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler
KEGG
GeneSetEnrichment
2.5 years ago
makrez
▴ 10
3
votes
2
replies
1.2k
views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
prabin.dm
• 0
0
votes
1
reply
1.4k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler
GeneSetEnrichment
enrichplot
updated 3.3 years ago by
Emilia
▴ 30 • written 3.4 years ago by
saw44
• 0
0
votes
0
replies
562
views
Clusterprofiler - best practise for missing ids
ReactomePA
clusterProfiler
GeneSetEnrichment
3.5 years ago
paun_bio
• 0
1
vote
4
replies
3.0k
views
Problem retrieving graphics in clusterprofiler
software error
clusterprofiler
GO
genesetenrichment
8.0 years ago
José Luis Lavín
▴ 10
1
vote
0
replies
1.1k
views
performance of limma gene set analysis in relation to Tarca et al. (2013)
limma
genesetenrichment
updated 8.2 years ago by
Steve Lianoglou
★ 13k • written 8.2 years ago by
Aditya
▴ 160
1
vote
0
replies
1.3k
views
News:
Announcing the EnrichmentBrowser 2.0
genesetenrichment
functional enrichment
enrichmentbrowser
News
8.3 years ago
Ludwig Geistlinger
▴ 70
5
votes
7
replies
4.9k
views
Using goseq on non-model organism - how to define genome?
goseq
go
genesetenrichment
updated 8.4 years ago by
Gordon Smyth
50k • written 8.4 years ago by
Jon Bråte
▴ 250
2
votes
1
reply
1.1k
views
elim method for KEGG pathways?
KEGG
genesetenrichment
elim
updated 8.4 years ago by
James W. MacDonald
65k • written 8.4 years ago by
jacorvar
▴ 40
2
votes
2
replies
2.0k
views
Goseq supported organism (felcat5) has an error when testing
goseq
genesetenrichment
annotation
updated 8.7 years ago by
Nadia Davidson
▴ 310 • written 8.7 years ago by
xyliu00
▴ 20
8
votes
14
replies
3.8k
views
reactome.db is not updated?
genesetenrichment
pathways
reactome.db
updated 9.1 years ago by
willem.ligtenberg
▴ 150 • written 9.5 years ago by
Guangchuang Yu
★ 1.2k
1
vote
1
reply
5.2k
views
Reduce the redundancy of enriched GO terms
GO
topgo
genesetenrichment
updated 9.3 years ago by
Luo Weijun
★ 1.6k • written 9.3 years ago by
Alan Smith
▴ 150
0
votes
0
replies
1.1k
views
Using segAnglePo() for a set of genes
geneexpression
genesetenrichment
segAnglePo
9.4 years ago
Peter.Wood
• 0
0
votes
0
replies
1.7k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
9.5 years ago
Guangchuang Yu
★ 1.2k
0
votes
3
replies
1.8k
views
Running the GSEA algorithm
Microarray
GeneSetEnrichment
PGSEA
GSEABase
GSRI
SeqGSEA
Microarray
GeneSetEnrichment
GSRI
updated 10.1 years ago by
Steve Lianoglou
★ 13k • written 10.1 years ago by
Leif Väremo
▴ 70
23 results • Page
1 of 1
Recent ...
Replies
Comment: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
In that case both time and treatment are identical things, so choose one and go with it.
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
numbers 1 to 3 represent observations and/or replicates Control is control. The three controls are shown as Control_1, control_2 and Contr…
Answer: Once again a "Model matrix not full rank"
by
James W. MacDonald
65k
The time and treatment are essentially the same thing, so you cannot have both in the model at the same time. Do the numbers 1:3 represent …
Answer: DESeq2 v1.35.0
by
Michael Love
41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i
by
James W. MacDonald
65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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