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Showing :
getBm
•
reset
0
votes
0
replies
81
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
28 days ago • updated 27 days ago
Abiologist
• 0
0
votes
1
reply
839
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 6 months ago by
James W. MacDonald
66k • written 6 months ago by
ai.yaku
• 0
0
votes
3
replies
1.6k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 2.4 years ago by
Mike Smith
★ 6.5k • written 2.4 years ago by
Ariel Simon
• 0
1
vote
1
reply
1.6k
views
Error in curl; timeout when using biomaRt
biomaRt
curl
timeout
getBM
Bioconductor
updated 2.8 years ago by
swbarnes2
★ 1.4k • written 2.8 years ago by
nlin0907
• 0
4
votes
9
replies
3.8k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 3.0 years ago by
Mike Smith
★ 6.5k • written 3.3 years ago by
Zen
▴ 20
0
votes
4
replies
1.6k
views
Question: error in Bioconductor getBM
biomaRt
getBM
updated 3.7 years ago by
James W. MacDonald
66k • written 3.7 years ago by
nitandressa
• 0
2
votes
2
replies
1.0k
views
How to retrieve attributes from a certain feature page using biomaRt
biomaRt
getBM
updated 3.9 years ago by
James W. MacDonald
66k • written 3.9 years ago by
georgewwp
• 0
0
votes
3
replies
923
views
Error in getBM() for Phytozome
biomaRt
getBM
Phytozome
Chlamydomonas
updated 4.2 years ago by
Mike Smith
★ 6.5k • written 4.2 years ago by
ytlin610
▴ 10
1
vote
8
replies
9.5k
views
BioMart: curl option when using getBM in loop
curl
biomart
getBM
Tutorial
updated 4.2 years ago by
James W. MacDonald
66k • written 4.2 years ago by
Ni-Ar
▴ 10
0
votes
5
replies
1.7k
views
biomaRt getBM() returns nothing most of the times
biomaRt
getBM
updated 4.2 years ago by
swbarnes2
★ 1.4k • written 4.2 years ago by
laurenz.holcik
• 0
0
votes
3
replies
873
views
Hello ! does anybody failed to convert id using getBM in biomaRt package?
biomaRt
getBM
updated 5.0 years ago by
James W. MacDonald
66k • written 5.0 years ago by
YinCY
▴ 20
3
votes
4
replies
1.5k
views
BioMart : Error in getBM, the BioMart webservice returned an invalid result
BioMart
getBM
webservice
updated 5.0 years ago by
Mike Smith
★ 6.5k • written 5.0 years ago by
amandinelecerfdefer
▴ 20
1
vote
3
replies
1.6k
views
Scan error using biomart getBM with version option and host set
biomart
ensembl
getbm
5.1 years ago
Marc Saric
▴ 70
0
votes
2
replies
881
views
Error in biomaRt
biomaRt
getBM
updated 5.2 years ago by
Mike Smith
★ 6.5k • written 5.2 years ago by
angelica.lindlof
• 0
2
votes
2
replies
1.6k
views
BiomaRt returns 0 obs
biomart
getbm
ensembl
updated 5.8 years ago by
James W. MacDonald
66k • written 5.8 years ago by
edelman
• 0
0
votes
4
replies
1.2k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart
mart
getbm
updated 5.9 years ago by
James W. MacDonald
66k • written 5.9 years ago by
cagenet34
▴ 20
0
votes
2
replies
1.1k
views
Difference between biomart R and biomart website GO query
biomart
ensemblbiomart
go
getbm
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
daniel.gaffney
▴ 20
0
votes
4
replies
1.9k
views
biomaRT getBM error
biomart
getbm
ensembl
updated 6.3 years ago by
Mike Smith
★ 6.5k • written 6.3 years ago by
scanchi
• 0
0
votes
2
replies
1.1k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
6.3 years ago
lluex.rova
• 0
1
vote
1
reply
1.2k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl
transcripts
getbm
biomart
6.4 years ago
hihi.joshi
• 0
1
vote
8
replies
2.4k
views
BiomaRt package not working
biomart
getbm
7.1 years ago
Didi
▴ 10
6
votes
12
replies
5.5k
views
Error in getBM of biomaRt package
biomaRt
getBM
updated 7.2 years ago by
boris.steipe
• 0 • written 7.4 years ago by
rubi
▴ 110
3
votes
3
replies
2.0k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM
entrez gene identifiers
duplicate
rnaseq
7.4 years ago
Jose Luis Soto Vázquez
• 0
1
vote
1
reply
1.2k
views
Agilent BiomaRT getBM unavailable filter value
biomaRT
getBM
new version
updated 7.5 years ago by
James W. MacDonald
66k • written 7.5 years ago by
u.seemab
• 0
1
vote
0
replies
1.3k
views
biomaRt getBM returns allele as logical instead of character
biomart
getBM
logical
error
8.4 years ago
Christian Ruckert
▴ 170
0
votes
2
replies
2.0k
views
seemingly erratic responses to different getBM biomaRt requests depending on the attributes requested
getbm
biomart
updated 8.5 years ago by
Thomas Maurel
▴ 800 • written 8.5 years ago by
efoss
▴ 10
0
votes
0
replies
1.1k
views
Missing/inconsistent data with BiomaRt getBM() query
biomart
getBM
8.7 years ago
yg246
• 0
0
votes
2
replies
1.6k
views
How to use gene_flank on getBM()
getBm
gene_flank
upstream_flank
9.1 years ago • updated 9.0 years ago
kris.petrini
• 0
0
votes
0
replies
1.0k
views
Unclear error in getBM() with attributes and output
getBM
software error
9.1 years ago
kris.petrini
• 0
0
votes
1
reply
2.0k
views
biomaRt getBM() problem
biomaRt
getBM
updated 9.2 years ago by
Thomas Maurel
▴ 800 • written 9.2 years ago by
dhondalay
• 0
0
votes
4
replies
1.5k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart
getbm
error
9.3 years ago
Tibor Fulop
• 0
31 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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Stephanie M. Gogarten
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Jonathan
▴ 10
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Frederico Moraes Ferreira
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