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Showing :
getBm
•
reset
1
vote
8
replies
9.2k
views
BioMart: curl option when using getBM in loop
curl
biomart
getBM
Tutorial
updated 4.1 years ago by
James W. MacDonald
65k • written 4.1 years ago by
Ni-Ar
▴ 10
6
votes
12
replies
5.3k
views
Error in getBM of biomaRt package
biomaRt
getBM
updated 7.1 years ago by
boris.steipe
• 0 • written 7.2 years ago by
rubi
▴ 110
4
votes
9
replies
3.7k
views
biomaRt - getBM; Error with obtaining a dataset from getBM() function
biomaRt
error
getBM
updated 2.9 years ago by
Mike Smith
★ 6.5k • written 3.2 years ago by
Zen
▴ 20
1
vote
8
replies
2.3k
views
BiomaRt package not working
biomart
getbm
7.0 years ago
Didi
▴ 10
3
votes
3
replies
2.0k
views
getBM function, search for annotation characteristics with entrezgene filters --> result with duplicates
getBM
entrez gene identifiers
duplicate
rnaseq
7.3 years ago
Jose Luis Soto Vázquez
• 0
0
votes
1
reply
1.9k
views
biomaRt getBM() problem
biomaRt
getBM
updated 9.0 years ago by
Thomas Maurel
▴ 800 • written 9.0 years ago by
dhondalay
• 0
0
votes
2
replies
1.9k
views
seemingly erratic responses to different getBM biomaRt requests depending on the attributes requested
getbm
biomart
updated 8.4 years ago by
Thomas Maurel
▴ 800 • written 8.4 years ago by
efoss
▴ 10
0
votes
4
replies
1.9k
views
biomaRT getBM error
biomart
getbm
ensembl
updated 6.2 years ago by
Mike Smith
★ 6.5k • written 6.2 years ago by
scanchi
• 0
0
votes
4
replies
1.6k
views
Question: error in Bioconductor getBM
biomaRt
getBM
updated 3.6 years ago by
James W. MacDonald
65k • written 3.6 years ago by
nitandressa
• 0
0
votes
2
replies
1.6k
views
How to use gene_flank on getBM()
getBm
gene_flank
upstream_flank
8.9 years ago
kris.petrini
• 0
1
vote
3
replies
1.6k
views
Scan error using biomart getBM with version option and host set
biomart
ensembl
getbm
4.9 years ago
Marc Saric
▴ 70
0
votes
5
replies
1.5k
views
biomaRt getBM() returns nothing most of the times
biomaRt
getBM
updated 4.1 years ago by
swbarnes2
★ 1.3k • written 4.1 years ago by
laurenz.holcik
• 0
2
votes
2
replies
1.5k
views
BiomaRt returns 0 obs
biomart
getbm
ensembl
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
edelman
• 0
1
vote
1
reply
1.5k
views
Error in curl; timeout when using biomaRt
biomaRt
curl
timeout
getBM
Bioconductor
updated 2.7 years ago by
swbarnes2
★ 1.3k • written 2.7 years ago by
nlin0907
• 0
0
votes
4
replies
1.5k
views
[biomaRt] getBM: Error when obtaining mim_morbid_description
biomart
getbm
error
9.2 years ago
Tibor Fulop
• 0
0
votes
3
replies
1.4k
views
biomaRT getBM() get stuck
biomaRt
getbm
ensembl
updated 2.3 years ago by
Mike Smith
★ 6.5k • written 2.3 years ago by
Ariel Simon
• 0
3
votes
4
replies
1.4k
views
BioMart : Error in getBM, the BioMart webservice returned an invalid result
BioMart
getBM
webservice
updated 4.9 years ago by
Mike Smith
★ 6.5k • written 4.9 years ago by
amandinelecerfdefer
▴ 20
1
vote
0
replies
1.3k
views
biomaRt getBM returns allele as logical instead of character
biomart
getBM
logical
error
8.3 years ago
Christian Ruckert
▴ 170
1
vote
1
reply
1.2k
views
Agilent BiomaRT getBM unavailable filter value
biomaRT
getBM
new version
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
u.seemab
• 0
1
vote
1
reply
1.2k
views
Ensembl transcripts returned by getBM not matching the biomart website
ensembl
transcripts
getbm
biomart
6.3 years ago
hihi.joshi
• 0
0
votes
4
replies
1.1k
views
retrieve vgnc gene name or vgnc gene symbol from Biomart after differential analysis
biomart
mart
getbm
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
cagenet34
▴ 20
0
votes
2
replies
1.1k
views
Difference between biomart R and biomart website GO query
biomart
ensemblbiomart
go
getbm
updated 6.0 years ago by
Mike Smith
★ 6.5k • written 6.0 years ago by
daniel.gaffney
▴ 20
0
votes
2
replies
1.1k
views
Error retrieving data with biomaRt
biomart
r
getbm
uniprot
6.2 years ago
lluex.rova
• 0
0
votes
0
replies
1.1k
views
Missing/inconsistent data with BiomaRt getBM() query
biomart
getBM
8.6 years ago
yg246
• 0
0
votes
0
replies
1.0k
views
Unclear error in getBM() with attributes and output
getBM
software error
8.9 years ago
kris.petrini
• 0
2
votes
2
replies
976
views
How to retrieve attributes from a certain feature page using biomaRt
biomaRt
getBM
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
georgewwp
• 0
0
votes
3
replies
871
views
Error in getBM() for Phytozome
biomaRt
getBM
Phytozome
Chlamydomonas
updated 4.1 years ago by
Mike Smith
★ 6.5k • written 4.1 years ago by
ytlin610
▴ 10
0
votes
2
replies
850
views
Error in biomaRt
biomaRt
getBM
updated 5.0 years ago by
Mike Smith
★ 6.5k • written 5.0 years ago by
angelica.lindlof
• 0
0
votes
3
replies
830
views
Hello ! does anybody failed to convert id using getBM in biomaRt package?
biomaRt
getBM
updated 4.9 years ago by
James W. MacDonald
65k • written 4.9 years ago by
YinCY
▴ 20
0
votes
1
reply
673
views
biomaRt_getBM_Failed to collect lazy table
getBM
biomaRt
updated 4 months ago by
James W. MacDonald
65k • written 4 months ago by
ai.yaku
• 0
30 results • Page
1 of 1
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Replies
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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