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Showing :
gosemsim
•
reset
3
votes
12
replies
3.2k
views
Trouble installing GOSemSim
GOSemSim
S4Vectors
5.9 years ago
sergi.picart
▴ 20
1
vote
12
replies
4.0k
views
Using GOsemsim to calculate semantic similarity between orthologus genes of two species
GOsemsim
Gene ontology
semantic similarity
across species
updated 8.2 years ago by
Guangchuang Yu
★ 1.2k • written 8.2 years ago by
saadmurtazakhan
▴ 10
0
votes
9
replies
3.2k
views
expired SQLiteConnection in GoSemSim package.
gene ontology
GOSemsim
updated 9.6 years ago by
Paulson, Ariel
▴ 10 • written 9.8 years ago by
anupambtech2007
• 0
8
votes
5
replies
2.7k
views
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
GOSemSim
gosemsim
gene ontology
updated 7.0 years ago by
ellascottgm
• 0 • written 7.0 years ago by
anton.kratz
▴ 60
0
votes
5
replies
1.8k
views
Using mgeneSim with Ensembl ids
Ensembl
GOsemsim
GO semantic similarity
updated 8.5 years ago by
Guangchuang Yu
★ 1.2k • written 8.5 years ago by
saadmurtazakhan
▴ 10
0
votes
4
replies
1.7k
views
problem of GOSemSim R package operation geneSim()
gosemsim
8.8 years ago
bnembarekmarwa
• 0
0
votes
4
replies
2.2k
views
GOterm semantic similarity with non-reference organism
gosemsim
go
gene ontology
9.8 years ago
cpcantalapiedra
• 0
0
votes
3
replies
2.3k
views
using the goana function from edgeR
RNASeq
edgeR
GO
GOSemSim
updated 3.0 years ago by
Gordon Smyth
52k • written 3.1 years ago by
David R
▴ 90
1
vote
3
replies
1.4k
views
Meaning of NA in geneSim result using GOSemSim
GOSemSim
Dnet
5.6 years ago
helenlong1
• 0
0
votes
2
replies
2.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.2 years ago
Chruut
• 0
1
vote
2
replies
2.0k
views
GOSemSim problem for yeast proteins
GOSemSim
yeast
updated 10.0 years ago by
Guangchuang Yu
★ 1.2k • written 10.0 years ago by
horcsct
▴ 10
2
votes
2
replies
2.0k
views
Error: could not find function "godata"
gosemsim
6.6 years ago
anton.kratz
▴ 60
0
votes
2
replies
1.4k
views
(GOSemSim package) secondary GO terms generating NA values
gosemsim
updated 6.2 years ago by
Guangchuang Yu
★ 1.2k • written 6.2 years ago by
l.willianpacheco
• 0
0
votes
1
reply
1.4k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 15.4 years ago by
Marc Carlson
★ 7.2k • written 15.4 years ago by
Gang Chen
▴ 20
0
votes
1
reply
1.6k
views
GOSemSim function, clusterSim throws expired SQLiteConnection error
GO
GOSemSim
GO
GOSemSim
updated 11.2 years ago by
Guangchuang Yu
★ 1.2k • written 11.2 years ago by
Guest User
★ 13k
0
votes
1
reply
638
views
GOSemSim - mgeneSim weird output
GOSemSim
similarity
updated 19 months ago by
Lluís Revilla Sancho
▴ 760 • written 19 months ago by
Giovanni
• 0
0
votes
1
reply
1.4k
views
GO similarity by GOSemSim
gosemsim
similarity
6.7 years ago
ahatashkar
• 0
0
votes
1
reply
1.3k
views
GOSemSim: "godata" function can not run using self-made org.db.package.
GOSemSim
makeOrgPackage
godata
updated 4.6 years ago by
James W. MacDonald
68k • written 4.6 years ago by
Wojeff
• 0
0
votes
1
reply
1.3k
views
is there an R library to compute semantic similarity in SNOMED ontology?
goSemSim
snomed
semantic similarity
updated 4.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 4.4 years ago by
izem.rima
• 0
0
votes
1
reply
1.3k
views
GOSemSim comparison between species
Yeast
GOSemSim
Yeast
GOSemSim
updated 12.7 years ago by
Dan Tenenbaum
★ 8.2k • written 12.7 years ago by
Katharine Coyte
▴ 10
0
votes
1
reply
1.2k
views
Gene similarity by GOSemSim
gosemsim
mgenesim
6.1 years ago
athirak1986
• 0
1
vote
1
reply
922
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim
GOSemSim
updated 2.0 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.0 years ago by
eliska.ochodkova
▴ 10
0
votes
1
reply
1.0k
views
Using GoSemSim with other Ontologies
GOSemSim
updated 5.6 years ago by
Lluís Revilla Sancho
▴ 760 • written 5.6 years ago by
helenlong1
• 0
0
votes
1
reply
1.6k
views
(pack: GOSemSim) NA semantic similarities between gene clusters
GO
SemSim
GOSemSim
GO
SemSim
GOSemSim
updated 12.6 years ago by
Guangchuang Yu
★ 1.2k • written 12.6 years ago by
Guest User
★ 13k
1
vote
1
reply
1.9k
views
How to get GOSemSim work on custom packages built with AnnotationForge
Guangchuang Yu
GOSemSim
AnnotationForge
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
Cei
• 0
0
votes
1
reply
2.2k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo
GOSemSim
GO.db
4.7 years ago
Jenny Drnevich
★ 2.0k
1
vote
1
reply
1.4k
views
GOSemSim Package - mgeneSim() function / In is.na(go) : is.na() applied to non-(list or vector) of type 'NULL'
GOSemSim
mgeneSim
updated 8.8 years ago by
Guangchuang Yu
★ 1.2k • written 8.8 years ago by
ረ
• 0
0
votes
1
reply
1.6k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim
gosemsim
updated 7.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.4 years ago by
s.apocarpum
▴ 10
0
votes
0
replies
183
views
Help using reduceSimMatrix with a custom annotation
AnnotationHub
GOSemSim
rrvgo
3 months ago
daccar98
• 0
0
votes
0
replies
1.4k
views
GOSemSim mgeneSim GO.BP calculation time
GO
GOSemSim
GO
GOSemSim
12.4 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
1.9k
views
DOSE: an R/Bioconductor package for Disease Ontology Semantic and Enrichment analysis
enrichment
genesetenrichment
dose
gosemsim
10.2 years ago
Guangchuang Yu
★ 1.2k
0
votes
0
replies
1.2k
views
GOSemSim - slow for BP terms
gosemsim
go enrichment
go semantic similarity
6.2 years ago
nooshin
▴ 300
0
votes
0
replies
935
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware
GOSemSim
annotation
3.0 years ago
Amandeep
• 0
0
votes
0
replies
1.1k
views
GOSemSim mgeneSim GO.BP calculation time
GO
GOSemSim
GO
GOSemSim
12.5 years ago
Guest User
★ 13k
34 results • Page
1 of 1
Recent ...
Replies
Comment: MEDIPS - error using MEDIPS.CpGenrich
by
sg
• 0
I have the same error when I use 22 chrs with the paramenters chr.select: Error in h(simpleError(msg, call)) : error in evaluating the …
Comment: Overcoming confounding in batch effect correction
by
mimi
• 0
https://www.bioconductor.org/packages/release/BiocViews.html#___BiologicalQuestion
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Votes
Overcoming confounding in batch effect correction
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
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