Showing : heatmaps • reset
0
votes
1
reply
688
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 6 months ago by ▴ 780 • written 6 months ago by • 0
0
votes
1
reply
831
views
edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by 50k • written 6 months ago by • 0
0
votes
3
replies
579
views
Installing Gpart
gpart heat heatmaps
updated 6 months ago by 65k • written 6 months ago by • 0
0
votes
2
replies
618
views
Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by • 0 • written 10 months ago by • 0
1
vote
1
reply
508
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 13 months ago by ▴ 80 • written 13 months ago by ▴ 10
0
votes
1
reply
629
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 14 months ago by ★ 4.1k • written 14 months ago by • 0
0
votes
2
replies
886
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
14 months ago shuangshuang • 0
0
votes
0
replies
818
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
15 months ago gianni.drm • 0
0
votes
1
reply
632
views
struggling to create a heatmap
DESeq2 heatmaps
updated 15 months ago by ★ 4.1k • written 15 months ago by ▴ 10
2
votes
3
replies
984
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 15 months ago by ▴ 40 • written 15 months ago by ▴ 10
2
votes
2
replies
624
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
15 months ago Sooni ▴ 10
2
votes
5
replies
3.2k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 15 months ago by 50k • written 16 months ago by ▴ 10
2
votes
5
replies
1.6k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
16 months ago Katharina • 0
0
votes
1
reply
2.1k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 18 months ago by 41k • written 19 months ago by • 0
0
votes
3
replies
1.1k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 19 months ago by 65k • written 19 months ago by • 0
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 20 months ago by ▴ 260 • written 20 months ago by • 0
1
vote
1
reply
989
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 22 months ago by 65k • written 22 months ago by • 0
0
votes
2
replies
3.8k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
22 months ago Bhavana • 0
0
votes
3
replies
1.3k
views
Persisting error in making a heatmap
heatmaps gplots
22 months ago beslinail • 0
1
vote
1
reply
777
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.0 years ago by 65k • written 2.0 years ago by • 0
0
votes
1
reply
1.1k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by • 0
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
2.9 years ago Clara • 0
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by ▴ 10
1
vote
1
reply
835
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 3.2 years ago by 41k • written 3.2 years ago by ▴ 30
4
votes
5
replies
1.3k
views
DEseq2 results
heatmaps DEGs PCA
updated 3.2 years ago by ★ 3.9k • written 3.2 years ago by • 0
0
votes
0
replies
721
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 5.2 years ago by 65k • written 5.2 years ago by ▴ 10
26 results • Page 1 of 1
Recent ...
Replies
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
You seem to have the misunderstanding that you can change the design matrix but keep all the other code unchanged. The contrasts are comput…
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Comment: Too many significant genes when integrating gtex and tcga by Michael Love 41k
Yes, this was one of the aspects we highlighted in the 2014 paper, and it's also in the workflow. Check these places first. Also take a st…
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Zainab • 0
Popular Question to Theo ▴ 10
Popular Question to gene_bioconductor ▴ 10
Popular Question to rohitsatyam102 ▴ 20
Locations • All
United States, 4 minutes ago
United States, 9 minutes ago
United States, 10 minutes ago
France, 12 minutes ago
WEHI, Melbourne, Australia, 18 minutes ago
Traffic: 587 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6