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heatmaps
•
reset
2
votes
5
replies
1.6k
views
ComplexHeatmap - z-score color coding failed
heatmaps
ComplexHeatmap
16 months ago
Katharina
• 0
4
votes
5
replies
1.3k
views
DEseq2 results
heatmaps
DEGs
PCA
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
MOHAMMAD
• 0
2
votes
5
replies
3.2k
views
How to identify top most variable genes from log2 normalized data?
supervised
edgeR
variance
RNASeq
heatmaps
updated 15 months ago by
Gordon Smyth
50k • written 16 months ago by
mohammedtoufiq91
▴ 10
0
votes
3
replies
1.1k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2
DESEQ2
tximeta
SummarizedExperiment
heatmaps
updated 19 months ago by
James W. MacDonald
65k • written 19 months ago by
uhlkatie
• 0
0
votes
3
replies
580
views
Installing Gpart
gpart
heat
heatmaps
updated 6 months ago by
James W. MacDonald
65k • written 6 months ago by
Benjamin
• 0
2
votes
3
replies
987
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma
heatmaps
ComplexHeatmap
updated 15 months ago by
elefth.pavlos
▴ 40 • written 15 months ago by
Sooni
▴ 10
0
votes
3
replies
1.3k
views
Persisting error in making a heatmap
heatmaps
gplots
22 months ago
beslinail
• 0
0
votes
2
replies
622
views
Drawing a heatmap with only limited genes
heatmaps
updated 10 months ago by
sayite3688
• 0 • written 10 months ago by
dania.khalid
• 0
0
votes
2
replies
3.8k
views
Scaling for p.heatmap
heatmaps
pheatmap
scaling
22 months ago
Bhavana
• 0
2
votes
2
replies
625
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2
heatmaps
15 months ago
Sooni
▴ 10
0
votes
2
replies
1.7k
views
PCA and heatmaps: most variable genes selection
DESeq2
ExpressionData
heatmaps
pca
2.9 years ago
Clara
• 0
0
votes
2
replies
887
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou
heatmaps
CyTOFpower
cytofWorkflow
14 months ago
shuangshuang
• 0
0
votes
1
reply
694
views
Error when trying to create a heatmap with DESeq2
Heatmap
RNA-seqanalysis
heatmaps
DESeq2
updated 6 months ago by
Basti
▴ 780 • written 6 months ago by
langziv
• 0
0
votes
1
reply
832
views
edgeR heatmap construction and interpretation
heatmaps
updated 6 months ago by
Gordon Smyth
50k • written 6 months ago by
ulin.1
• 0
1
vote
1
reply
838
views
PCA rand heatmap of raw data
DESeq2
DiffSeq
PrincipalComponent
rlog
heatmaps
updated 3.2 years ago by
Michael Love
41k • written 3.2 years ago by
Fischer-philipp
▴ 30
0
votes
1
reply
2.4k
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
trichorico
▴ 10
1
vote
1
reply
777
views
Method for generating heatmap of overlapping DEGs?
heatm
heatmaps
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
axe880
• 0
0
votes
1
reply
1.1k
views
Help me do a gene enrichment analysis
DESeq2
topGO
heatmaps
updated 2.7 years ago by
Guandong Shang
▴ 40 • written 2.7 years ago by
anasjamshed1994
• 0
0
votes
1
reply
634
views
struggling to create a heatmap
DESeq2
heatmaps
updated 15 months ago by
ATpoint
★ 4.1k • written 15 months ago by
m-bihie
▴ 10
0
votes
1
reply
1.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R
heatmaps
ComplexHeatmap
Heatma
updated 20 months ago by
Zuguang Gu
▴ 260 • written 20 months ago by
תום
• 0
0
votes
1
reply
630
views
Heatmap of two conditions from the normalized gene count data
GeneExpression
heatmaps
updated 14 months ago by
ATpoint
★ 4.1k • written 14 months ago by
Amazing570
• 0
0
votes
1
reply
2.1k
views
Heatmap with result DESeq analysis
DESeq2
results
Heatmaps
plots
updated 18 months ago by
Michael Love
41k • written 19 months ago by
Chiara
• 0
1
vote
1
reply
509
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors
heatmaps
heatmap.2
updated 13 months ago by
Konstantinos Yeles
▴ 80 • written 13 months ago by
Sooni
▴ 10
1
vote
1
reply
989
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat
heatmaps
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
MauriAndres
• 0
0
votes
0
replies
822
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape
Heatmap
heatmaps
WGCNA
15 months ago
gianni.drm
• 0
0
votes
0
replies
721
views
How to generate input file for Bioconductor package heatmaps
heatmaps
input file
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
bony.dekumar
▴ 10
26 results • Page
1 of 1
Recent ...
Replies
Answer: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Hi Michael, I think there is something wrong with the generation of nullranges. I was working with small RNA and methylation overlaps. …
Answer: Once again a "Model matrix not full rank"
by
swbarnes2
★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
Gordon Smyth
50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R
by
Gordon Smyth
50k
It is true that goseq isn't available for Bioc 3.19 (as at 4 May 2024). In the meantime, you could consider using the goana() and kegga() …
Answer: limma Intercept vs No-intercept models completely changing DMR results?
by
James W. MacDonald
65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
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