Bioconductor Library

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Bioconductor Install library biocmanager

updated 2.1 years ago by Vincent J. Carey, Jr. 6.7k • written 2.1 years ago by Ndimensional ▴ 20

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library composition vst DESeq2 Normalization

3.8 years ago kristoffersandas • 0

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getAE ae2bioc bioconductor packages library

updated 6.0 years ago by Mike Smith ★ 6.6k • written 6.0 years ago by kodherif • 0

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opencyto fatal error library

updated 8.2 years ago by Jiang, Mike ★ 1.3k • written 8.2 years ago by Maria • 0

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MotifDb library load

updated 8.5 years ago by Paul Shannon ▴ 470 • written 8.5 years ago by Pengcheng Yang ▴ 60

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software error bug library

updated 8.6 years ago by Welliton de Souza ▴ 70 • written 8.6 years ago by guus.steeg ▴ 10

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bioconductor R library software error ALL library

8.6 years ago alyssa.ylescu • 0

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qvalue library software error package installation package updates

8.8 years ago tah340 • 0

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installation windows10 not-writable warning message library

9.8 years ago juancaf • 0

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installation dependency library hdf5

10.0 years ago Ulrik Stervbo ▴ 30

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variantannotation library error

updated 10.0 years ago by Valerie Obenchain ★ 6.8k • written 10.0 years ago by kmu004 ▴ 50

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version release library

updated 10.5 years ago by Hotz, Hans-Rudolf ▴ 400 • written 10.5 years ago by Malcolm Cook ★ 1.6k

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library characters

10.7 years ago Patrick Schorderet ▴ 20

13 results • Page 1 of 1

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Answer: Can I set the normalizationFactors of DEseq2 object as 1 after using RUVg? by Michael Love 43k

I'm not familiar with this usage, or code here ``` normFactors <- exp(-1 * offst(set2)) ``` In the RNA-seq gene-level workflow, we …

Answer: Which of apeglm and ashr may be more appropriate for pseudobulked DESeq2 analysi by Michael Love 43k

> apeglm appears much more aggressive in shrinkage, pushing many genes toward logFC = 0 > ashr maintains a gradient of shrinkage val…

Comment: voomLmFit fitted log-CPM values by Gordon Smyth 53k

The fitted values are on the log2CPM scale. I would have told you if they were not! I think you may be getting confused by the differences…

Comment: voomLmFit fitted log-CPM values by Lina ▴ 10

Is the output from fitted(v) in the log2 CPM scale? or CPM scale?

Answer: voomLmFit fitted log-CPM values by Gordon Smyth 53k

Fitted values are obtained from limma MArrayLM objects by ``` fitted(v) ```

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A: How barcode-plot enrichment is calculated?

Answer: ROAST compare results with complex design

How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?

Answer: How to account for solvent controls in DESeq2 when comparing follicular vs lutea

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