Bioconductor Library

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Bioconductor Install library biocmanager

updated 2.4 years ago by Vincent J. Carey, Jr. 6.7k • written 2.4 years ago by Ndimensional ▴ 20

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5.2k

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library composition vst DESeq2 Normalization

4.0 years ago kristoffersandas • 0

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1.5k

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getAE ae2bioc bioconductor packages library

updated 6.2 years ago by Mike Smith ★ 6.6k • written 6.2 years ago by kodherif • 0

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3.0k

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opencyto fatal error library

updated 8.5 years ago by Jiang, Mike ★ 1.3k • written 8.5 years ago by Maria • 0

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2.1k

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MotifDb library load

updated 8.7 years ago by Paul Shannon ▴ 470 • written 8.7 years ago by Pengcheng Yang ▴ 60

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3.2k

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software error bug library

updated 8.8 years ago by Welliton de Souza ▴ 70 • written 8.9 years ago by guus.steeg ▴ 10

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1.6k

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bioconductor R library software error ALL library

8.9 years ago alyssa.ylescu • 0

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qvalue library software error package installation package updates

9.1 years ago tah340 • 0

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3.5k

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installation windows10 not-writable warning message library

10.1 years ago juancaf • 0

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4.0k

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installation dependency library hdf5

10.3 years ago • updated 10.2 years ago Ulrik Stervbo ▴ 30

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5.6k

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variantannotation library error

updated 10.3 years ago by Valerie Obenchain ★ 6.8k • written 10.3 years ago by kmu004 ▴ 50

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2.0k

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version release library

updated 10.7 years ago by Hotz, Hans-Rudolf ▴ 400 • written 10.7 years ago by Malcolm Cook ★ 1.6k

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1.8k

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library characters

11.0 years ago Patrick Schorderet ▴ 20

13 results • Page 1 of 1

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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Answer: PTM analysis in LIMPA by Gordon Smyth 53k

For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…

Answer: problem reading bam files into nucleR by James W. MacDonald 68k

The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…

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C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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Popular Question to James W. MacDonald 68k