Bioconductor Library

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Bioconductor Install library biocmanager

updated 17 months ago by Vincent J. Carey, Jr. 6.7k • written 17 months ago by Ndimensional ▴ 20

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3.8k

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library composition vst DESeq2 Normalization

3.1 years ago kristoffersandas • 0

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1.3k

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getAE ae2bioc bioconductor packages library

updated 5.3 years ago by Mike Smith ★ 6.6k • written 5.3 years ago by kodherif • 0

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2.8k

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opencyto fatal error library

updated 7.5 years ago by Jiang, Mike ★ 1.3k • written 7.5 years ago by Maria • 0

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1.8k

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MotifDb library load

updated 7.8 years ago by Paul Shannon ▴ 470 • written 7.8 years ago by Pengcheng Yang ▴ 60

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2.9k

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software error bug library

updated 7.9 years ago by Welliton de Souza ▴ 70 • written 7.9 years ago by guus.steeg ▴ 10

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1.5k

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bioconductor R library software error ALL library

7.9 years ago alyssa.ylescu • 0

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3.1k

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qvalue library software error package installation package updates

8.1 years ago tah340 • 0

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3.2k

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installation windows10 not-writable warning message library

9.1 years ago juancaf • 0

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3.7k

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installation dependency library hdf5

9.3 years ago Ulrik Stervbo ▴ 30

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5.2k

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variantannotation library error

updated 9.3 years ago by Valerie Obenchain ★ 6.8k • written 9.3 years ago by kmu004 ▴ 50

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1.7k

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version release library

updated 9.7 years ago by Hotz, Hans-Rudolf ▴ 400 • written 9.7 years ago by Malcolm Cook ★ 1.6k

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1.6k

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library characters

10.0 years ago Patrick Schorderet ▴ 20

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Answer: Error in get_anno_data(ontology) : ontology not supported yet... by Guido Hooiveld ★ 4.1k

Did you check the help page for the function `enrichDO`? Type `?enrichDO`. I am asking, because there it is stated that the argument `ont`…

Comment: Build error on kunpeng2 Linux aarch64 by martin.grigorov ▴ 10

Hi, There was a problem with `icu` and because of that the (r)curl library was not installed. The system/OS curl library is one version ol…

Answer: Standardization of rlog transformed counts before PCA by ATpoint ★ 4.6k

I guess you mean scaling in terms of Z-scoring? There are plenty of posts towards scaling in PCA both here on Bioconductor and in other com…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Also, re DMR.plot(), yes the understanding is that all DMRs from EPICv2 should be plotted in hg38. I've left that implied for the user sinc…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Tim Peters ▴ 200

Hi Xiaofei, Thanks for this. If your data is from 450K, you'll have to call your DMRs in hg19, and then lift the DMR ranges over to hg38 p…

Votes

Comment: Can we get beta values with DMRcate package

Answer: Can we get beta values with DMRcate package

DiffBind giving different results from dba.report() and dba.analyze(..., bRetrieveAnalysis=TRUE)

Answer: Deseq2 Design

Answer: Fold change calculation in Diffbind vs. DESEQ2?

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Popular Question to martin.grigorov ▴ 10

Scholar to James W. MacDonald 67k