Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
limma
•
reset
0
votes
0
replies
4
views
Extremely small p-values using Limma for proteomic data
Proteomics
limma
12 minutes ago
Abbey
• 0
1
vote
2
replies
335
views
limma Intercept vs No-intercept models completely changing DMR results?
limma
DMRcate
MethylationArray
EPICV2
updated 3 days ago by
Gordon Smyth
50k • written 3 days ago by
Kim
• 0
0
votes
1
reply
108
views
Gene-by-sample covariates in limma
Metabolomics
limma
updated 4 days ago by
Gordon Smyth
50k • written 4 days ago by
c53aba27
• 0
3
votes
4
replies
218
views
Help with error using camera() in limma
CAMERA
limma
7 days ago • updated 6 days ago
Chris
• 0
0
votes
3
replies
246
views
Assist me in determining whether the analysis process using the limma package has been executed correctly.
GEOquery
ArrayExpress
limma
DifferentialExpression
updated 6 days ago by
James W. MacDonald
65k • written 8 days ago by
SSSJec
• 0
0
votes
2
replies
168
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma
RNASeq
voom
written 14 days ago by
taur.vil
• 0
0
votes
2
replies
213
views
RNAseq:Technical replicates from different batches
technicalReplicates
BatchEffect
limma
RNASeq
18 days ago • updated 15 days ago
catv
• 0
14
votes
17
replies
1.2k
views
Why p value inconsistent when using different number of pathway score?
limma
17 days ago • updated 5 days ago
Chris
• 0
3
votes
1
reply
179
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 18 days ago by
Gordon Smyth
50k • written 19 days ago by
Shaimaa Gamal
• 0
0
votes
7
replies
323
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
20 days ago • updated 14 days ago
hortense96
• 0
1
vote
3
replies
352
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 22 days ago by
Gordon Smyth
50k • written 27 days ago by
Simran
• 0
5
votes
9
replies
930
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
26 days ago • updated 19 days ago
Chris
• 0
2
votes
6
replies
404
views
How to make boxplot with pairwise and overall p value from Limma
t.test
boxplot
limma
anova
28 days ago
Chris
• 0
0
votes
1
reply
171
views
Limma design matrix only showing 3/4 treatments?
limma
designmatrix
updated 4 weeks ago by
Gordon Smyth
50k • written 4 weeks ago by
avery
• 0
0
votes
4
replies
315
views
Help with design.matrix
limma
4 weeks ago
andrea.rodriguez-martinez13
• 0
1
vote
4
replies
444
views
Using a change in a continuous explanatory variable to test changes in gene expression with limma
limma
updated 4 weeks ago by
Gordon Smyth
50k • written 4 weeks ago by
jari.karppinen
• 0
0
votes
2
replies
195
views
voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
Voom
Limma
WGCNA
4 weeks ago
Gimena
• 0
15
votes
23
replies
2.0k
views
The difference when using Limma compare between 3 conditions vs 2 conditions
limma
5 weeks ago • updated 6 days ago
Chris
• 0
2
votes
8
replies
544
views
Microarray Limma Model fitting and DEG
limma
DGEanalysis
updated 5 weeks ago by
Gordon Smyth
50k • written 5 weeks ago by
Amit
• 0
5
votes
25
replies
939
views
limma models out of memory issue on Slurm HPC
Regression
limma
STATISITICS
HPC
updated 4 weeks ago by
Gordon Smyth
50k • written 6 weeks ago by
Jitendra
▴ 10
7
votes
6
replies
459
views
Batch Effect Correction, Gene Filtering
DGE
limma
updated 6 weeks ago by
Gordon Smyth
50k • written 6 weeks ago by
Amit
• 0
0
votes
1
reply
236
views
Using splicing junction counts with edgeR/limma-voom
splicing
limma
edgeR
updated 6 weeks ago by
Gordon Smyth
50k • written 6 weeks ago by
scoops_streams_06
• 0
0
votes
4
replies
399
views
Unable to annotate ExpressionSet object from hugene11st chip
oligo
limma
hugene11stprobeset.db
AffymetrixChip
7 weeks ago • updated 6 weeks ago
Efra
• 0
5
votes
7
replies
461
views
DEG Filtering
MicroarrayData
limma
Genefiltering
updated 5 weeks ago by
Gordon Smyth
50k • written 7 weeks ago by
Amit
• 0
2
votes
2
replies
266
views
Question about extracting co-efficients for pairwise comparisons in edgeR
limma
fit
design
RNASeq
edgeR
7 weeks ago
Sabiha
▴ 20
0
votes
2
replies
272
views
RNA sequencing raw counts gene filtering
DESeq2
limma
RNAseq
7 weeks ago
kcarey
• 0
1
vote
3
replies
411
views
Cross-species analysis - how to compute the mid parent value?
DESeq2
limma
edgeR
DifferentialExpression
written 3 months ago by
pl23
• 0
2
votes
6
replies
492
views
limma: vooma mean-variance trend and data filtration
MicroarrayData
limma
8 weeks ago • updated 6 weeks ago
Lily Cheang
▴ 10
3
votes
8
replies
519
views
Constrast for Time Course Experiments using Limma
limma
8 weeks ago
dl17032000
• 0
8
votes
6
replies
463
views
DGE analysis with LIMMA
limma
updated 9 weeks ago by
Gordon Smyth
50k • written 9 weeks ago by
Amit
• 0
0
votes
0
replies
153
views
Can I combine collinear variables into a single value
BatchEffect
limma
9 weeks ago
Harrsha
• 0
0
votes
3
replies
293
views
Differential enrichment analysis
limma
Differentialenrichmentanalysis
DEP
updated 8 weeks ago by
Gordon Smyth
50k • written 9 weeks ago by
Laura
• 0
0
votes
4
replies
304
views
Interactions in batches of varying size with different number of replicates using limma
limma
RNASeq
DifferentialExpression
9 weeks ago
mperalc
• 0
3
votes
5
replies
633
views
DESEQ Inquiry
DESeq2
rnaseqGene
RNASeqData
limma
RNASeq
updated 9 weeks ago by
Michael Love
42k • written 10 weeks ago by
sap275
▴ 10
2
votes
1
reply
267
views
Limma Question
DESeq2
BatchEffect
limma
RNASeq
updated 10 weeks ago by
Michael Love
42k • written 10 weeks ago by
sap275
▴ 10
1
vote
2
replies
312
views
Bioconductor unreachable?
limma
10 weeks ago
edoardo
• 0
0
votes
9
replies
564
views
limma fo continous variables
limma
DEGseq
updated 10 weeks ago by
James W. MacDonald
65k • written 10 weeks ago by
mia
• 0
0
votes
2
replies
297
views
limma model matrix questions
limmaGUI
limma
pairedsamples
11 weeks ago
whyw6948
• 0
0
votes
2
replies
323
views
Limma with replicates at different time points
RNAs
limma
Differen
11 weeks ago • updated 10 weeks ago
alessandro
• 0
2
votes
1
reply
305
views
Normalization factors when there is a possible unidirectional expression
limma
Normalization
DifferentialExpression
updated 11 weeks ago by
ATpoint
★ 4.1k • written 11 weeks ago by
Shaimaa Gamal
• 0
1
vote
3
replies
359
views
CAMERA + Gene Ontology Gene Sets
GO
limma
CAMERA
updated 12 weeks ago by
Gordon Smyth
50k • written 12 weeks ago by
Tyler Sagendorf
▴ 10
0
votes
4
replies
375
views
limma with interaction term
R
biostatistics
limma
Epigenetics
12 weeks ago • updated 10 weeks ago
Jitendra
▴ 10
3
votes
2
replies
298
views
Design matrix after RUVg correction
RUVSeq
limma
DifferentialExpression
12 weeks ago
Shaimaa Gamal
• 0
2
votes
3
replies
331
views
Longitudinal analysis in Limma: Block=ID as random effect
limma
12 weeks ago
COPD_Project
• 0
2
votes
2
replies
292
views
Limma design for 3 replicated time courses comparing treatment vs placebo
design
limma
3 months ago
SamGG
▴ 350
1
vote
4
replies
414
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 12 weeks ago by
Gordon Smyth
50k • written 3 months ago by
Jitendra
▴ 10
4
votes
3
replies
360
views
voom with quality weights after RUV correction
RUVSeq
limma
DifferentialExpression
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
Shaimaa Gamal
• 0
2
votes
3
replies
372
views
TMM normalization after RUVg correction
RUVSeq
limma
DifferentialExpression
edgeR
Normalization
updated 3 months ago by
James W. MacDonald
65k • written 3 months ago by
Shaimaa Gamal
• 0
1
vote
2
replies
1.2k
views
How to combine a bulk and pseudobulk dataset?
DESeq2
limma
RNASeq
RNASeqData
written 12 months ago by
informatician
• 0
0
votes
2
replies
267
views
Pairwise analysis of DESeq result and limma result
DESeq2
limma
3 months ago
Lily Cheang
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: meffil.snp.concordance
by
James W. MacDonald
65k
This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…
Answer: minfi latest update for EPIC V2 chip
by
James W. MacDonald
65k
Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…
Answer: Recovering my account credentials on Bioconductor
by
shepherl
3.9k
As we will need to exchange some information can you please contact me at bioconductorcoreteam@gmail.com and I can better assist you. Che…
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Michael Love
42k
Popular Question
to
Malcolm Cook
★ 1.6k
Popular Question
to
priyanka.m
• 0
Locations
• All
Ghana/KNUST,
just now
France,
2 minutes ago
United States,
4 minutes ago
United States,
4 minutes ago
Italy,
4 minutes ago
Traffic: 926 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6