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maSigPro
•
reset
3
votes
7
replies
5.8k
views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
6.4 years ago
dacaba.92
▴ 10
0
votes
6
replies
1.7k
views
[maSigPro] two color array analysis of time series in different cell lines.???
limma
maSigPro
limma
maSigPro
updated 5.7 years ago by
sbbinfo90
• 0 • written 10.6 years ago by
neeraj rana
▴ 60
4
votes
5
replies
2.2k
views
MasigPro and estimation of theta for negative binomial law
R
masigpro
edgr
rnaseq
negative binomial model
6.3 years ago
nicolas.hipp
▴ 20
0
votes
5
replies
5.8k
views
masigpro Error in terms.formula(formula, data = data) : '.' in formula and no 'data' argument
masigpro
updated 9 months ago by
Tatsuya
• 0 • written 8.9 years ago by
john
▴ 120
1
vote
3
replies
1.3k
views
masigpro: could not find function "negative.binomial"
masigpro
5.5 years ago
nicolas.descostes
▴ 20
0
votes
3
replies
1.4k
views
maSigPro and "vars" argument
maSigPro
maSigPro
updated 12.7 years ago by
Mª José Nueda
▴ 90 • written 12.7 years ago by
Andrea Grilli
▴ 240
0
votes
3
replies
1.4k
views
[maSigPro] How to analyze 2-colour microarrays?
Normalization
limma
maSigPro
Normalization
limma
maSigPro
updated 14.0 years ago by
Mª José Nueda
▴ 90 • written 14.1 years ago by
boczniak767
▴ 720
0
votes
3
replies
1.3k
views
maSigPro and EMV no longer available for windows.
maSigPro
maSigPro
updated 15.0 years ago by
Ana Conesa
▴ 340 • written 15.0 years ago by
Giulio Di Giovanni
▴ 540
0
votes
3
replies
1.3k
views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro
maSigPro
updated 13.5 years ago by
Mª José Nueda
▴ 90 • written 13.5 years ago by
boczniak767
▴ 720
0
votes
3
replies
850
views
MaSigPro Single Series Analysis
maSigPro
updated 14 months ago by
guang-hui
• 0 • written 4.2 years ago by
dorothy.mitchell
• 0
0
votes
2
replies
805
views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
updated 3 months ago by
QINYAN
• 0 • written 3.7 years ago by
Olof.rundquist
• 0
0
votes
2
replies
1.4k
views
question about p-values in maSigPro
affy
maSigPro
affy
maSigPro
14.8 years ago
Dick Beyer
★ 1.4k
0
votes
2
replies
2.0k
views
maSigPro genes from clusters
masigpro
clustering
updated 7.8 years ago by
Mª José Nueda
▴ 90 • written 7.9 years ago by
ls299
• 0
0
votes
2
replies
1.3k
views
maSigPro see.genes function gives "invalid 'times' argument" error for single time course data
masigpro
3.9 years ago • updated 3.3 years ago
daw277
• 0
0
votes
2
replies
836
views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
DcL-A
• 0
0
votes
2
replies
1.2k
views
row with zeros
maSigPro
min.obs
p.vector
updated 8.6 years ago by
Mª José Nueda
▴ 90 • written 8.6 years ago by
gmdc
• 0
0
votes
2
replies
1.1k
views
Time course cDNA two color array analysis
TimeCourse
limma
timecourse
maSigPro
TimeCourse
limma
timecourse
maSigPro
17.3 years ago
Marcelo Laia
▴ 450
0
votes
1
reply
1.5k
views
maSigPro: error using see.genes()
masigpro
updated 6.2 years ago by
therealsisterdot
• 0 • written 7.0 years ago by
valentine.murigneux
• 0
0
votes
1
reply
1.2k
views
MaSigPro
maSigPro
maSigPro
updated 16.5 years ago by
Mª José Nueda
▴ 90 • written 16.5 years ago by
Narinder Singh Sahni
▴ 50
0
votes
1
reply
1.3k
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
14.5 years ago
lohith madireddy
▴ 40
0
votes
1
reply
1.3k
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 14.5 years ago by
jeremy wilson
▴ 150 • written 14.5 years ago by
Ana Conesa
▴ 340
0
votes
1
reply
1.8k
views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
updated 14.0 years ago by
Mª José Nueda
▴ 90 • written 14.0 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.6k
views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
updated 13.9 years ago by
Wolfgang Huber
★ 13k • written 14.0 years ago by
Matthias Boeck
▴ 10
0
votes
1
reply
1.2k
views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
updated 13.6 years ago by
avehna
▴ 240 • written 13.6 years ago by
boczniak767
▴ 720
0
votes
1
reply
1.2k
views
Paired Data in maSigPro
maSigPro
maSigPro
13.4 years ago
Mike Walter
▴ 230
0
votes
1
reply
1.9k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
updated 12.9 years ago by
Andrea Grilli
▴ 240 • written 12.9 years ago by
Valerie Obenchain
★ 6.8k
0
votes
1
reply
979
views
maSigPro dataset information
maSigPro
maSigPro
10.6 years ago
Guest User
★ 13k
0
votes
1
reply
3.3k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 8.6 years ago by
Mª José Nueda
▴ 90 • written 10.2 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
updated 8.2 years ago by
efejiroe
• 0 • written 8.8 years ago by
dimitri.leonid.lindenwald
▴ 50
0
votes
1
reply
1.2k
views
Paralelization of maSigPro
maSigPro
parallel
8.6 years ago
gmdc
• 0
0
votes
1
reply
1.3k
views
maSigPro edesign and error message
masigpro
8.1 years ago
simonjean434
▴ 10
0
votes
1
reply
1.6k
views
RNASeq time-course analysis with maSigPro: T.fit error when assessing multiple groups
rnaseq
masigpro
timecourse
9.0 years ago
Ryan Goosen
• 0
1
vote
1
reply
913
views
Are significant genes ordered in maSigPro?
masigpro
rnaseq
updated 6.9 years ago by
James W. MacDonald
65k • written 6.9 years ago by
itspilipineiro
• 0
0
votes
1
reply
1.3k
views
glm.fit problem with maSigPro
software error
maSigPro
Nueda
RNAseq
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
lalamig
• 0
0
votes
1
reply
969
views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
updated 3.4 years ago by
Mª José Nueda
▴ 90 • written 3.4 years ago by
Itzel
• 0
0
votes
1
reply
817
views
t.fit stops in masigpro while running RNA seq data
RNASeqData
maSigPro
3.0 years ago
subashika
• 0
0
votes
1
reply
404
views
T.fit function of maSigPro returns error message
maSigPro
7 months ago
hanna.g
• 0
0
votes
0
replies
1.1k
views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
6.4 years ago
jelisaveta.jeki.djordjevic
• 0
0
votes
0
replies
808
views
maSigPro groups comparisons
masigpro
7.8 years ago
ls299
• 0
0
votes
0
replies
1.0k
views
MaSigPro - pre-filtering of genes
MaSigPro
8.2 years ago
GFM
▴ 20
0
votes
0
replies
1.1k
views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
12.9 years ago
Andrea Grilli
▴ 240
1
vote
0
replies
500
views
Normalization RNA-seq data maSigPro
maSigPro
21 months ago
W.a.m.dekker
▴ 10
0
votes
0
replies
1.2k
views
[maSigPro] Splitting data - how?
maSigPro
maSigPro
13.0 years ago
Valerie Obenchain
★ 6.8k
0
votes
0
replies
1.2k
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
14.5 years ago
jeremy wilson
▴ 150
0
votes
0
replies
1.5k
views
maSigPro time problem (2.trial)
maSigPro
maSigPro
15.0 years ago
Klaus-Peter Pleissner
▴ 70
0
votes
0
replies
1.2k
views
microarray analysis of a dose response * strain experiment
Microarray
affy
limma
maSigPro
DOSE
BRAIN
Microarray
affy
limma
maSigPro
DOSE
BRAIN
17.5 years ago
Naomi Altman
★ 6.0k
0
votes
0
replies
979
views
Block design for maSigPro
masigpro
timecourse
7.7 years ago
sanj
▴ 20
0
votes
0
replies
279
views
maSigPro drug concentration
maSigPro
8 months ago
jiawen
• 0
0
votes
0
replies
6.3k
views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro
error
PlotGroups
7.0 years ago
nicolas.descostes
▴ 20
0
votes
0
replies
438
views
maSigPro visualizing individually each plot from each cluster
plot
maSigPro
Clustering
20 months ago
oseias.rf.junior
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
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