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missmethyl
•
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3
votes
3
replies
3.5k
views
missMethyl: Gene ontology analysis
missMethyl
8.1 years ago
philipp24
▴ 30
1
vote
3
replies
3.0k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
8.1 years ago
philipp24
▴ 30
0
votes
1
reply
1.2k
views
missMethyl package: gsameth bias plots
missmethyl
plots
bias
package
updated 7.2 years ago by
belinda.phipson
▴ 40 • written 7.2 years ago by
evani.radiya.dixit
• 0
0
votes
3
replies
1.3k
views
Details of gene names in DE
missmethyl
updated 7.1 years ago by
James W. MacDonald
65k • written 7.1 years ago by
r.clifford
• 0
0
votes
2
replies
1.4k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 6.8 years ago by
Gordon Smyth
50k • written 7.0 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.3k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl
diffvar
design matrix
limma
block
updated 6.0 years ago by
lhuang7
▴ 50 • written 6.9 years ago by
Simone
▴ 190
2
votes
3
replies
941
views
GSEA for paired methylation data
missMethyl
GSEA
minfi
methylGSA
updated 16 months ago by
belinda.phipson
▴ 40 • written 16 months ago by
Lukas
• 0
1
vote
2
replies
1.4k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology
GO
overrepresentation analysis
missmethyl
gostats
updated 7.7 years ago by
James W. MacDonald
65k • written 7.7 years ago by
graggsd
• 0
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi
methylation
dataimport
minfidata
missmethyl
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
moldach
▴ 20
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate
enrichment analysis
epic array
goregion
missmethyl
updated 2.8 years ago by
Jovana Maksimovic
▴ 10 • written 3.8 years ago by
yoursbassanio
▴ 10
0
votes
1
reply
818
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 2.8 years ago by
Jovana Maksimovic
▴ 10 • written 3.7 years ago by
stewart999
▴ 10
0
votes
1
reply
257
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 8 weeks ago by
belinda.phipson
▴ 40 • written 8 weeks ago by
s.malik
• 0
1
vote
1
reply
563
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis
topGO
missMethyl
MethylationArrayData
MethylationArray
updated 12 months ago by
belinda.phipson
▴ 40 • written 12 months ago by
Grace
• 0
0
votes
1
reply
482
views
dmrcate needs at least two non-NA values to interpolate
miss
DMRcate
missMethyl
updated 8 months ago by
Tim Peters
▴ 180 • written 8 months ago by
b.curran
• 0
2
votes
6
replies
951
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 14 months ago by
belinda.phipson
▴ 40 • written 14 months ago by
Joana
• 0
0
votes
0
replies
366
views
goMeth
missMethyl
13 months ago
anmolanp
▴ 10
0
votes
0
replies
912
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.0 years ago
Taub, Margaret
▴ 10
0
votes
0
replies
896
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.0 years ago
RC
• 0
0
votes
0
replies
850
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl
gsameth
5.9 years ago
owen.whitley
▴ 10
0
votes
0
replies
911
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.7 years ago
peter.fransquet
• 0
0
votes
2
replies
570
views
ageData (minfi pipeline)
ageData
missMethyl
differentialvariability
minfi
updated 5 weeks ago by
CHEN
• 0 • written 11 months ago by
Saanchi
• 0
0
votes
1
reply
494
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
12 months ago
Grace
• 0
0
votes
0
replies
1.2k
views
Pathway analysis of differentially methylated CpGs
limma
missmethyl
8.1 years ago
philipp24
▴ 30
23 results • Page
1 of 1
Recent ...
Replies
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons
by
Michael Love
41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Votes
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
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