Showing : missmethyl • reset
3
votes
3
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3.5k
views
missMethyl: Gene ontology analysis
missMethyl
8.1 years ago philipp24 ▴ 30
2
votes
3
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942
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GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 16 months ago by ▴ 40 • written 16 months ago by • 0
2
votes
6
replies
960
views
No enriched GO terms CpGs
DNAMethylation missMethyl
updated 14 months ago by ▴ 40 • written 14 months ago by • 0
1
vote
2
replies
1.4k
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Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 7.7 years ago by 65k • written 7.7 years ago by • 0
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 20
1
vote
1
reply
563
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
1
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3
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3.0k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
8.1 years ago philipp24 ▴ 30
0
votes
1
reply
1.3k
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Test for differential variability with missMethyl (DiffVar) using block design
missmethyl diffvar design matrix limma block
updated 6.0 years ago by ▴ 50 • written 6.9 years ago by ▴ 190
0
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0
replies
913
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.0 years ago Taub, Margaret ▴ 10
0
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0
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897
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.0 years ago RC • 0
0
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0
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850
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missmethyl gsameth outputs matrix instead of dataframe
missmethyl gsameth
5.9 years ago owen.whitley ▴ 10
0
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0
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911
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
votes
1
reply
483
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dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 9 months ago by ▴ 180 • written 9 months ago by • 0
0
votes
6
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1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.8 years ago by ▴ 10 • written 3.8 years ago by ▴ 10
0
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1
reply
818
views
missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 2.8 years ago by ▴ 10 • written 3.7 years ago by ▴ 10
0
votes
1
reply
258
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Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
updated 8 weeks ago by ▴ 40 • written 9 weeks ago by • 0
0
votes
2
replies
571
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 6 weeks ago by • 0 • written 11 months ago by • 0
0
votes
1
reply
496
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topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
12 months ago Grace • 0
0
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0
replies
1.2k
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Pathway analysis of differentially methylated CpGs
limma missmethyl
8.1 years ago philipp24 ▴ 30
0
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0
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367
views
goMeth
missMethyl
13 months ago anmolanp ▴ 10
0
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1
reply
1.2k
views
missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 7.2 years ago by ▴ 40 • written 7.2 years ago by • 0
0
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3
replies
1.3k
views
Details of gene names in DE
missmethyl
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
0
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2
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1.4k
views
prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 6.8 years ago by 50k • written 7.0 years ago by ★ 2.0k
23 results • Page 1 of 1
Recent ...
Replies
Answer: Trim/Filter out-of-bounds GRanges by Michael Love 41k
https://support.bioconductor.org/p/73432/#73448
Comment: Couldn't connect to server while using "pathways" by Michael Love 41k
You've put the tag "DESeq2" which results in an email to the maintainer, me, that I should respond to a post on the support site. Can you …
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Vincent J. Carey, Jr. 6.7k
btw that was run on M1 mac
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by Vincent J. Carey, Jr. 6.7k
the test is not portable > aa <- aa_mutmat(acc = "MIYS930101", aaindex = "aaindex2") > str(aa) num [1:20, 1:20] 0.34 -0.0…
Comment: Method to find pathways different between 2 groups by Chris • 0
Sorry for not clear! Glad to know camera() is widely used. I just try to find papers use this method for learning purpose. Which gives more…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: Method to find pathways different between 2 groups
Comment: Trying to use enrichGO
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
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