Showing : missmethyl • reset
3
votes
3
replies
3.5k
views
missMethyl: Gene ontology analysis
missMethyl
8.2 years ago philipp24 ▴ 30
2
votes
3
replies
963
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GSEA for paired methylation data
missMethyl GSEA minfi methylGSA
updated 16 months ago by ▴ 40 • written 16 months ago by • 0
2
votes
6
replies
992
views
No enriched GO terms CpGs
DNAMethylation missMethyl
updated 14 months ago by ▴ 40 • written 14 months ago by • 0
1
vote
2
replies
1.4k
views
Gene Ontology Overrepresentation Analysis with a custom level of Abstraction of GO Terminology
gene ontology GO overrepresentation analysis missmethyl gostats
updated 7.8 years ago by 66k • written 7.8 years ago by • 0
1
vote
2
replies
2.0k
views
Minfi read.metharray.sheet error
minfi methylation dataimport minfidata missmethyl
updated 5.7 years ago by 66k • written 5.7 years ago by ▴ 20
1
vote
1
reply
579
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 12 months ago by ▴ 40 • written 12 months ago by • 0
1
vote
3
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3.0k
views
Pathway analysis of differentially methylated CpGs
limma missmethyl
8.2 years ago • updated 8.1 years ago philipp24 ▴ 30
0
votes
1
reply
1.3k
views
Test for differential variability with missMethyl (DiffVar) using block design
missmethyl diffvar design matrix limma block
updated 6.0 years ago by ▴ 50 • written 6.9 years ago by ▴ 190
0
votes
0
replies
924
views
MissMethyl: Sample size and control probes
missmethyl RUV control probes
6.1 years ago Taub, Margaret ▴ 10
0
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0
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909
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which value from ruvadj in missMethyl can present methylation status
methylation missmethyl RUV batch effect
6.0 years ago RC • 0
0
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0
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860
views
missmethyl gsameth outputs matrix instead of dataframe
missmethyl gsameth
5.9 years ago owen.whitley ▴ 10
0
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0
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925
views
missMethyl EPIC manifest update
missmethyl epic illuminahumanmethylationepicanno.ilm10b4.hg19. ruv
5.7 years ago peter.fransquet • 0
0
votes
1
reply
508
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 9 months ago by ▴ 180 • written 9 months ago by • 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.9 years ago by ▴ 10 • written 3.9 years ago by ▴ 10
0
votes
1
reply
832
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missMethyl - get names of differentially methylated genes from gometh()
missMethyl
updated 2.9 years ago by ▴ 10 • written 3.7 years ago by ▴ 10
0
votes
1
reply
296
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation GO MethylationArray missMethyl EPICv2
updated 11 weeks ago by ▴ 40 • written 11 weeks ago by • 0
0
votes
2
replies
591
views
ageData (minfi pipeline)
ageData missMethyl differentialvariability minfi
updated 8 weeks ago by • 0 • written 12 months ago by • 0
0
votes
1
reply
521
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation missMethyl Pathways
13 months ago Grace • 0
0
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0
replies
1.2k
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Pathway analysis of differentially methylated CpGs
limma missmethyl
8.2 years ago philipp24 ▴ 30
0
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0
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383
views
goMeth
missMethyl
14 months ago anmolanp ▴ 10
0
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1
reply
1.2k
views
missMethyl package: gsameth bias plots
missmethyl plots bias package
updated 7.2 years ago by ▴ 40 • written 7.2 years ago by • 0
0
votes
3
replies
1.3k
views
Details of gene names in DE
missmethyl
updated 7.1 years ago by 66k • written 7.1 years ago by • 0
0
votes
2
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1.4k
views
prior.prob has opposite effects in goana and kegga?
limma missMethyl gometh goana kegga
updated 6.9 years ago by 50k • written 7.0 years ago by ★ 2.0k
23 results • Page 1 of 1
Recent ...
Replies
Answer: Help with infinite recursion - non-zero exit status in installation of GenomeInf by James W. MacDonald 66k
Maybe just try again? ``` > install("GenomeInfoDbData", force = TRUE) 'getOption("repos")' replaces Bioconductor standard repositorie…
Comment: Help with infinite recursion - non-zero exit status in installation of GenomeInf by Brandon • 0
Hello, As an update, I am able to install and load GenomeInfoDb successfully in a fresh renv in my WSL distro. However, I'm not sure what …
Comment: slingshot: error with plot3d.SlingshotDataSet by Kelly Street • 0
This issue has been addressed [on GitHub][1]. [1]: https://github.com/kstreet13/slingshot/issues/249
Comment: Slightly different count plots from R and spreadsheet by Michael Love 42k
Change timepoint to an integer in the data frame: ``` as.numeric(as.character( <factor> )) ``` Then it should make points instead of boxe…
Answer: WGNCA kME vs. kIM by Vitor • 0
You can compare kIM and kME within module assignments. The plot below is for my network (I used Pearson correlation and signed network). !…
Votes
Including squared covariates to account for non-linear dependencies in differential gene expression analysis
DESeq2 DE gene expression of scRNA-seq pseudobulk
Answer: Multiple factor DSEq2 result generates weird volcano plot
DESeq2 for single cell pseudobulk processing
Simultaneously adding two different covariates in the model gives error in DESeq2.
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