Showing : oligo • reset
1
vote
3
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5.3k
views
How to select top 10% highly variable genes in microarray data?
r microarray snp6.0 oligo
updated 7.7 years ago by ▴ 360 • written 7.7 years ago by ▴ 120
1
vote
0
replies
1.9k
views
Problems running oligo functions in parallel on a linux computer
biocparallel oligo rma linux parallel
7.8 years ago s.munster ▴ 40
0
votes
4
replies
8.6k
views
How to annotate the Affymetrix Human Genome U133 Plus 2.0 Array chip
oligo annotate
7.9 years ago llkxiaolan ▴ 10
0
votes
7
replies
5.4k
views
How to annotate the [MoGene-2_0-st] Affymetrix Mouse Gene 2.0 ST Array chip
annotation oligo
updated 7.9 years ago by ★ 4.1k • written 7.9 years ago by ▴ 10
1
vote
6
replies
2.2k
views
oligo: crash/segfault when fitting probelevel model
oligo openblas preprocessCore
updated 8.1 years ago by 68k • written 8.1 years ago by ★ 4.1k
0
votes
2
replies
2.4k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo pd.hta.2.0 CEL R windows 7
8.1 years ago ladhikari • 0
0
votes
2
replies
1.5k
views
oligo and parallel computing (on Windows)?
oligo parallel computation
updated 8.1 years ago by 68k • written 8.1 years ago by ★ 4.1k
5
votes
6
replies
2.7k
views
Error installing pd.huex.1.0.st.v2: database disk image is malformed
pd.huex.1.0.st.v2 oligo
updated 8.1 years ago by 68k • written 8.1 years ago by ★ 4.1k
2
votes
2
replies
1.3k
views
paCalls with Clariom Chips
oligo microarray clariom
updated 8.2 years ago by 68k • written 8.2 years ago by • 0
6
votes
8
replies
2.9k
views
Gene level analysis of Affymetrix GeneChip Mouse Exon Arrays
affy aroma.affymetrix exon array xps oligo
8.2 years ago Gordon Smyth 53k
3
votes
1
reply
1.6k
views
Filtering absent transcripts from Gene ST array
microarray oligo gene ST pacalls
updated 8.4 years ago by 68k • written 8.4 years ago by • 0
0
votes
1
reply
1.6k
views
oligo rma() function giving unused argument error
oligo rma
updated 8.5 years ago by 68k • written 8.5 years ago by ▴ 40
2
votes
4
replies
3.6k
views
Error with boxplot command from oligo package with raw Affy data
oligo
updated 8.5 years ago by 68k • written 8.5 years ago by • 0
2
votes
3
replies
2.0k
views
Problem with memory limit in Rstudio/Windows when importing Affymetrix HTA 2.0 CEL files with oligo R package
oligo hta2.0 affymetrix microarrays memory problem
updated 8.5 years ago by 68k • written 8.5 years ago by ▴ 840
6
votes
7
replies
4.0k
views
Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with oligo for DE analysis
oligo affycoretools hta2.0 affymetrix
updated 3.4 years ago by ▴ 10 • written 8.5 years ago by ▴ 840
1
vote
4
replies
5.3k
views
Transcript to gene in clariom d human affymetrix data
annotation clariomdhumantranscriptcluster.db oligo
8.6 years ago yahia.adnani • 0
0
votes
0
replies
1.5k
views
[oligo] Farms and DFW summalization of Affymetrix Clariom S array using oligo package
oligo farms
8.6 years ago snj • 0
0
votes
1
reply
1.0k
views
Problem Annotation Construction with pdInfoBuilder - Microarray Bioconductor
bioconductor pdfinfobuilder microarray nimblegene oligo
8.6 years ago sorghills • 0
6
votes
4
replies
2.1k
views
Weird error with raw data using function boxplot after importing Affymetrix Human ST 2.0 CEL files with oligo
microarray affymetrix Human ST arrays oligo hugene20sttranscriptcluster.db
updated 8.6 years ago by 68k • written 8.6 years ago by ▴ 840
2
votes
1
reply
1.9k
views
BrainArray Custom CDFs and oligo
oligo brainarray rma customcdf
updated 8.6 years ago by 68k • written 8.6 years ago by • 0
9
votes
6
replies
4.5k
views
Preprocessing of Human Gene 2.0 ST microarrays with oligo R package and annotation options
microarray oligo affycoretools pd.hugene.2.0.st hugene20sttranscriptcluster.db
updated 8.7 years ago by 68k • written 8.7 years ago by ▴ 840
2
votes
1
reply
1.6k
views
Output of ArrayExpress() function
oligo oligoclasses arrayexpress
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
votes
3
replies
4.6k
views
How do I choose between using affy or oligo package for preprocessing microarrays?
microarray affymetrix microarrays affy oligo
updated 4.6 years ago by 68k • written 8.7 years ago by • 0
0
votes
4
replies
2.6k
views
How to filter probesets from the expression set that do not contain Entrez/Gene Symbol identifiers
oligo
updated 8.8 years ago by 68k • written 8.8 years ago by ▴ 80
0
votes
1
reply
899
views
ISO help making a heatmap from a subset of microarray probes in the expression set
oligo
updated 8.8 years ago by 68k • written 8.8 years ago by ▴ 80
1
vote
3
replies
2.3k
views
platform design package for new Clariom S arrays
oligo clariomS makeplatformdesign
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
0
votes
0
replies
897
views
how to let readSummaries() use the correct directory to read allele information
bioconductor R oligo pd.genomewidesnp.6
8.9 years ago hd48 • 0
2
votes
6
replies
2.2k
views
Help: obtain Entrez ID's from limma top table with Affymetrix microarray (pd.zebgene.1.1.st)
affmetrix microarray limma oligo
updated 8.9 years ago by 68k • written 8.9 years ago by ▴ 80
0
votes
2
replies
1.4k
views
strange pseudo-image plot from MoGene 2.0 array
pseudoimage oligo affymetrix mouse gene arrays oligo package
updated 8.9 years ago by 68k • written 8.9 years ago by ▴ 840
0
votes
4
replies
1.1k
views
How to get probe names for raw intensity values?
oligo
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
2
votes
4
replies
1.8k
views
getProbeInfo and exprs return matrices and data.frames of different dimensions
oligo oligoclasses affy
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
3
votes
7
replies
2.1k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo pdinfobuilder pd.mogene.1.1.st customcdf
updated 9.0 years ago by 68k • written 9.5 years ago by ★ 4.1k
2
votes
3
replies
1.4k
views
oligo: how to extract the number of probes that make up a probeset?
oligo pd.mogene.2.0.st
updated 9.1 years ago by 68k • written 9.1 years ago by ★ 4.1k
0
votes
5
replies
1.5k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo rsqlite pd.hta.2.0
updated 9.1 years ago by 68k • written 9.1 years ago by 6.7k
1
vote
5
replies
3.0k
views
Affymetrix Rat Transcriptome Array (Clariom D) annotation
annotation microarray pdinfobuilder oligo
9.1 years ago Ed D • 0
0
votes
2
replies
1.9k
views
Need help annotating Affymetrix 1.1ST microarrays
oligo annotation affymetrix microarrays zebrafish
updated 9.1 years ago by ★ 4.1k • written 9.1 years ago by ▴ 80
0
votes
2
replies
2.9k
views
Cannot install Oligo package
oligo oligoclasses
9.2 years ago Anna Dvorkin ▴ 40
2
votes
2
replies
2.1k
views
How to : Preprocessing of Gene ST array with Oligo
oligo hugene20st
updated 9.3 years ago by 68k • written 9.3 years ago by ▴ 40
0
votes
3
replies
3.3k
views
Questions about analysis of Human Gene 2.0 ST Array
oligo
updated 9.5 years ago by 68k • written 9.5 years ago by ▴ 120
0
votes
2
replies
1.9k
views
installing error for oligo package
oligo
updated 9.5 years ago by ★ 4.3k • written 9.5 years ago by • 0
3
votes
3
replies
3.2k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays microarray pd.hta.2.0 oligo rma
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
0
votes
1
reply
655
views
Gene expression data normalization by family pedigree
oligo
updated 9.6 years ago by 68k • written 9.6 years ago by • 0
0
votes
0
replies
1.6k
views
Reading Affymetrix data from pd.hugene.2.0.st using oligo for RNA degradation plot
oligo rnadegradationplot affymetrix microarrays pd.hugene.2.0.st
9.6 years ago Biologist ▴ 120
0
votes
4
replies
2.6k
views
Reading Affymetrix data from pd.hugene.2.0.st using oligo/affy
affy oligo
updated 9.6 years ago by ▴ 120 • written 10.7 years ago by ▴ 50
3
votes
10
replies
2.6k
views
Still need help identifying a good workflow for finding DEG in hugene 2.0 st
microarray hugene20 limma oligo
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
0
votes
0
replies
3.0k
views
DE analysis pipeline with Hugene 2.0 ST arrays
hugene20 microarray limma limma paired analysis oligo
9.7 years ago hakimelakhrass • 0
4
votes
10
replies
3.0k
views
Limma/oligo always crashing
limma microarray pd.hugene.2.0.st hugene20 oligo
9.7 years ago hakimelakhrass • 0
0
votes
2
replies
2.1k
views
How to use cdf version20 with oligo package
oligo cdf
updated 9.7 years ago by 68k • written 9.7 years ago by ▴ 10
1
vote
1
reply
2.0k
views
crlmm Illumina SNP array genotyping
crlmm oligo
9.7 years ago vladhkim ▴ 10
0
votes
8
replies
2.9k
views
HTA 2.0 ST array annotation
hta20sttranscriptcluster.db oligo
updated 9.7 years ago by 68k • written 9.7 years ago by ▴ 10
430 results • Page 2 of 9
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Answer: How to model DE for RNA-seq in concordant monozygotic twins? by Gordon Smyth 53k
Your question is more about science than it is about software syntax, and I can't give advice about how to conduct a scientific analysis, n…
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Nadia, please tag your question with the name of the package ("LEA") that you are asking about. "impute" is the name of a different Biocond…
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FYI the **scRNAseq** packages uses a non-ExperimentHub storage platform, see [here](https://github.com/ArtifactDB/gypsum-worker) for more d…
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Is the Seurat package installed? The error somewhat suggests that it could be related, and at https://www.bioconductor.org/packages/release…
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Defining sample groups is separate to reading in the DIA-NN data, because the sample conditions and covariates are not necessarily coded in…
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