Showing : package updates • reset
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Installing DFP package
unable to update packages: foreign package updates
7.2 years ago shreyoshi.2311 • 0
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News: DEADLINE: commits to Bioc 3.7
release bioconductor packages package updates News
7.6 years ago shepherl 4.2k
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News: List of Deprecated Packages for Bioc3.7
package updates deprecate release News
7.8 years ago shepherl 4.2k
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0
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1.2k
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News: List of Deprecated Packages for Bioc3.7
package updates deprecate News
7.8 years ago shepherl 4.2k
0
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1
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1.5k
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News: List of Deprecated Packages for Bioc3.7
package updates deprecate News
7.9 years ago shepherl 4.2k
0
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1.4k
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News: List of Deprecated Packages for Bioc 3.7
deprecate news package updates News
8.0 years ago shepherl 4.2k
0
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4
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2.8k
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Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
8.0 years ago siinemselvi • 0
1
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3
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2.6k
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Access to github repository- how does one know if their ssh public key was accepted
github package updates developers package development
8.2 years ago rtraborn • 0
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1
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1.4k
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Updating packages, Bioconductor 3.5: "package or namespace load failed for GO.db"
package updates
8.4 years ago gctromp ▴ 10
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3.6k
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Corrupt Database Error When Loading qvalue() Package
qvalue library software error package installation package updates
9.1 years ago tah340 • 0
0
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2
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4.0k
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installation of package 'rmarkdown' had non-zero exit status
rmarkdown package updates
updated 9.3 years ago by 68k • written 9.3 years ago by ▴ 10
1
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2
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1.5k
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New package version submission
package submit package package updates
9.5 years ago francescodc87 • 0
0
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3
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1.7k
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Prevent biocLite() from asking to update packages every time it's used
bioclite package installation package updates
updated 9.6 years ago by 25k • written 9.6 years ago by ▴ 40
1
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1
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1.9k
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Error updating packages: couldn’t understand kern.osversion
package updates error
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by • 0
0
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4
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2.7k
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update packages when installing a new package
bioclite package updates
updated 10.5 years ago by ★ 8.2k • written 10.5 years ago by ▴ 680
0
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6
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7.3k
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Bioconductor 3.0 and old versions with R 3.2.0
package updates
10.5 years ago Cataphractus • 0
1
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13
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6.4k
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'Codetools' and 'mgcv' packages fail to update
package updates codetools deseq mgcv
updated 10.7 years ago by • 0 • written 10.7 years ago by • 0
2
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2
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8.5k
views
biocLite() fails to update packages when main library not writable
bioclite package updates
updated 10.7 years ago by ★ 8.2k • written 10.8 years ago by ★ 2.0k
2
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2
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2.5k
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Anybody know if this will change: package ‘RMySQL’ is not available (for R version 3.1.2)
rmysql R version 3.1.2 3.1.2 package updates
11.1 years ago milorobertsmith • 0
19 results • Page 1 of 1
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Answer: problem reading bam files into nucleR by James W. MacDonald 68k
The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to James W. MacDonald 68k
Popular Question to Gordon Smyth 53k
Commentator to sina.nassiri ▴ 130
Popular Question to Hervé Pagès 16k
Popular Question to jared.andrews07 ▴ 30
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