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Replies
Comment: Help with error using camera() in limma
by
James W. MacDonald
65k
Again, this is where you need to read the help page and try to diagnose. It says
```
index: an index vector or a list of index vectors. …
Comment: Help with error using camera() in limma
by
Chris
•
0
Thanks James! That is a great tip.
cameraRes <- camera(numeric_matrix, geneSets, inter.gene.cor=0.01, design)
Error in Stat[iset]…
Answer: Help with error using camera() in limma
by
James W. MacDonald
65k
The first step should be to read the help page, which says
```
Usage:
## Default S3 method:
camera(y, index, design, cont…
Comment: Assist me in determining whether the analysis process using the limma package ha
by
James W. MacDonald
65k
The description of the analysis says there are 120 genes at a 1.5 fold change and a p<0.05. They don't mention any multiplicity correction.…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
•
0
When using `arrayWeights()`, you mean the variability within the same group, is that correct? I alway run `arrayWeights()` because I naive …
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